Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Y5I    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.51 N N
2 S1 C2 S C sing 1.71 N Y
3 S1 C3 S C sing 1.76 N Y
4 C2 N1 C N doub 1.29 N Y
5 C5 C6 C C doub 1.38 N Y
6 C5 C4 C C sing 1.4 N Y
7 C3 C4 C C sing 1.48 N N
8 C3 N2 C N doub 1.31 N Y
9 N1 N2 N N sing 1.26 N Y
10 C6 C7 C C sing 1.39 N Y
11 C4 C21 C C doub 1.4 N Y
12 C8 O1 C O sing 1.43 N N
13 C8 C9 C C sing 1.53 N N
14 C7 C20 C C doub 1.39 N Y
15 C7 O1 C O sing 1.36 N N
16 C21 C20 C C sing 1.38 N Y
17 C20 F2 C F sing 1.35 N N
18 C9 C10 C C sing 1.53 N N
19 C10 O2 C O sing 1.43 N N
20 O2 C11 O C sing 1.36 N N
21 C11 C19 C C doub 1.39 N Y
22 C11 C12 C C sing 1.39 N Y
23 C19 C18 C C sing 1.38 N Y
24 C12 C13 C C doub 1.38 N Y
25 C18 F1 C F sing 1.35 N N
26 C18 C14 C C doub 1.38 N Y
27 C13 C14 C C sing 1.38 N Y
28 C14 C15 C C sing 1.51 N N
29 C15 C16 C C sing 1.53 N N
30 C16 C17 C C sing 1.51 N N
31 C17 O3 C O doub 1.21 N N
32 C17 O4 C O sing 1.34 N N
33 C21 H19 C H sing 1.08 N N
34 C16 H16 C H sing 1.09 N N
35 C16 H17 C H sing 1.09 N N
36 C15 H14 C H sing 1.09 N N
37 C15 H15 C H sing 1.09 N N
38 C6 H5 C H sing 1.08 N N
39 C1 H1 C H sing 1.09 N N
40 C1 H2 C H sing 1.09 N N
41 C1 H3 C H sing 1.09 N N
42 C9 H8 C H sing 1.09 N N
43 C9 H9 C H sing 1.09 N N
44 C12 H12 C H sing 1.08 N N
45 C5 H4 C H sing 1.08 N N
46 C8 H6 C H sing 1.09 N N
47 C8 H7 C H sing 1.09 N N
48 C10 H10 C H sing 1.09 N N
49 C10 H11 C H sing 1.09 N N
50 C13 H13 C H sing 1.08 N N
51 O4 H20 O H sing 0.97 N N
52 C19 H18 C H sing 1.08 N N