Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : YA7    

Bonds between two atoms of the molecule

Total Number of Bonds: 70


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O2 C O sing 1.43 N N
2 N35 C34 N C sing 1.4 N N
3 N35 S36 N S sing 1.66 N N
4 O39 S36 O S doub 1.42 N N
5 O2 C3 O C sing 1.36 N N
6 C34 C3 C C doub 1.4 N Y
7 C34 C33 C C sing 1.39 N Y
8 C37 S36 C S sing 1.81 N N
9 C3 N4 C N sing 1.32 N Y
10 S36 O38 S O doub 1.42 N N
11 C33 C6 C C doub 1.4 N Y
12 N4 C5 N C doub 1.32 N Y
13 C31 N30 C N sing 1.47 N N
14 C31 C32 C C sing 1.51 N N
15 C6 C5 C C sing 1.39 N Y
16 C6 C7 C C sing 1.48 N N
17 N30 C28 N C sing 1.34 N N
18 C32 C7 C C doub 1.39 N Y
19 C32 C27 C C sing 1.4 N Y
20 C7 C8 C C sing 1.39 N Y
21 C23 C21 C C sing 1.53 N N
22 C28 C27 C C sing 1.48 N N
23 C28 O29 C O doub 1.22 N N
24 C27 C26 C C doub 1.4 N Y
25 C8 C9 C C doub 1.39 N Y
26 C21 O20 C O sing 1.43 N N
27 C21 C24 C C sing 1.53 N N
28 C26 C9 C C sing 1.39 N Y
29 C9 C10 C C sing 1.48 N N
30 O20 C17 O C sing 1.43 N N
31 C24 N15 C N sing 1.47 N N
32 C25 C10 C C doub 1.39 N Y
33 C25 C14 C C sing 1.39 N Y
34 C10 C11 C C sing 1.4 N Y
35 C17 C16 C C sing 1.53 N N
36 C17 C19 C C sing 1.53 N N
37 N15 C14 N C sing 1.39 N N
38 N15 C16 N C sing 1.47 N N
39 C14 N13 C N doub 1.32 N Y
40 C11 C12 C C doub 1.38 N Y
41 N13 C12 N C sing 1.32 N Y
42 C1 H1 C H sing 1.09 N N
43 C1 H2 C H sing 1.09 N N
44 C1 H3 C H sing 1.09 N N
45 C5 H4 C H sing 1.08 N N
46 C8 H5 C H sing 1.08 N N
47 C11 H6 C H sing 1.08 N N
48 C12 H7 C H sing 1.08 N N
49 C16 H8 C H sing 1.09 N N
50 C16 H9 C H sing 1.09 N N
51 C17 H10 C H sing 1.09 N N
52 C19 H11 C H sing 1.09 N N
53 C19 H12 C H sing 1.09 N N
54 C19 H13 C H sing 1.09 N N
55 C21 H14 C H sing 1.09 N N
56 C23 H15 C H sing 1.09 N N
57 C23 H16 C H sing 1.09 N N
58 C23 H17 C H sing 1.09 N N
59 C24 H18 C H sing 1.09 N N
60 C24 H19 C H sing 1.09 N N
61 C31 H20 C H sing 1.09 N N
62 C33 H21 C H sing 1.08 N N
63 C37 H22 C H sing 1.09 N N
64 C37 H23 C H sing 1.09 N N
65 C37 H24 C H sing 1.09 N N
66 C25 H25 C H sing 1.08 N N
67 C26 H26 C H sing 1.08 N N
68 N35 H27 N H sing 0.97 N N
69 C31 H28 C H sing 1.09 N N
70 N30 H29 N H sing 0.97 N N