Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YB5    

Bonds between two atoms of the molecule

Total Number of Bonds: 90


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C43 C42 C C doub 1.38 N Y
2 C43 C44 C C sing 1.38 N Y
3 C42 C41 C C sing 1.38 N Y
4 C44 C39 C C doub 1.38 N Y
5 C41 C40 C C doub 1.38 N Y
6 C39 C40 C C sing 1.38 N Y
7 C39 C38 C C sing 1.51 N N
8 C22 C21 C C sing 1.53 N N
9 C22 C17 C C sing 1.53 N N
10 C21 C20 C C sing 1.53 N N
11 C38 C37 C C sing 1.53 N N
12 C17 C16 C C sing 1.53 N N
13 C17 C18 C C sing 1.53 N N
14 N15 C16 N C sing 1.46 N N
15 N15 C14 N C sing 1.37 N N
16 C20 C19 C C sing 1.53 N N
17 N23 C14 N C doub 1.3 N N
18 C18 C19 C C sing 1.53 N N
19 C37 C36 C C sing 1.53 N N
20 C14 N13 C N sing 1.37 N N
21 C36 N35 C N sing 1.47 N N
22 N13 C12 N C sing 1.46 N N
23 N35 C34 N C sing 1.38 N N
24 C12 C11 C C sing 1.53 N N
25 N28 C27 N C doub 1.3 N Y
26 N28 C29 N C sing 1.35 N Y
27 C27 N26 C N sing 1.36 N Y
28 C11 C10 C C sing 1.53 N N
29 C34 C29 C C doub 1.41 N Y
30 C34 N33 C N sing 1.33 N Y
31 C29 C30 C C sing 1.41 N Y
32 O6 C5 O C sing 1.43 N N
33 N26 C30 N C sing 1.37 N Y
34 N26 C25 N C sing 1.46 N N
35 N33 C32 N C doub 1.32 N Y
36 C30 N31 C N doub 1.33 N Y
37 C5 C25 C C sing 1.55 N N
38 C5 C4 C C sing 1.55 N N
39 C10 S9 C S sing 1.81 N N
40 C25 O24 C O sing 1.44 N N
41 C32 N31 C N sing 1.32 N Y
42 C4 O3 C O sing 1.43 N N
43 C4 C7 C C sing 1.54 N N
44 S9 C8 S C sing 1.81 N N
45 O24 C7 O C sing 1.44 N N
46 C7 C8 C C sing 1.53 N N
47 C4 H1 C H sing 1.09 N N
48 C5 H2 C H sing 1.09 N N
49 C7 H3 C H sing 1.09 N N
50 C8 H4 C H sing 1.09 N N
51 C8 H5 C H sing 1.09 N N
52 C10 H6 C H sing 1.09 N N
53 C10 H7 C H sing 1.09 N N
54 C17 H8 C H sing 1.09 N N
55 C20 H9 C H sing 1.09 N N
56 C20 H10 C H sing 1.09 N N
57 C21 H11 C H sing 1.09 N N
58 C21 H12 C H sing 1.09 N N
59 C22 H13 C H sing 1.09 N N
60 C22 H14 C H sing 1.09 N N
61 C11 H15 C H sing 1.09 N N
62 C11 H16 C H sing 1.09 N N
63 C12 H17 C H sing 1.09 N N
64 C12 H18 C H sing 1.09 N N
65 C16 H19 C H sing 1.09 N N
66 C16 H20 C H sing 1.09 N N
67 C18 H21 C H sing 1.09 N N
68 C18 H22 C H sing 1.09 N N
69 C19 H23 C H sing 1.09 N N
70 C19 H24 C H sing 1.09 N N
71 C25 H25 C H sing 1.09 N N
72 C27 H26 C H sing 1.08 N N
73 C32 H27 C H sing 1.08 N N
74 C36 H28 C H sing 1.09 N N
75 C36 H29 C H sing 1.09 N N
76 C37 H30 C H sing 1.09 N N
77 C37 H31 C H sing 1.09 N N
78 C38 H32 C H sing 1.09 N N
79 C38 H33 C H sing 1.09 N N
80 C40 H34 C H sing 1.08 N N
81 C41 H35 C H sing 1.08 N N
82 C42 H36 C H sing 1.08 N N
83 C43 H37 C H sing 1.08 N N
84 C44 H38 C H sing 1.08 N N
85 N13 H39 N H sing 0.97 N N
86 N15 H40 N H sing 0.97 N N
87 N23 H41 N H sing 0.97 N N
88 N35 H42 N H sing 0.97 N N
89 O3 H43 O H sing 0.97 N N
90 O6 H44 O H sing 0.97 N N