Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YBN    

Bonds between two atoms of the molecule

Total Number of Bonds: 54


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C O C O sing 1.43 N N
2 N C18 N C sing 1.47 N N
3 N C19 N C sing 1.47 N N
4 O C1 O C sing 1.36 N N
5 S C8 S C sing 1.75 N Y
6 S C9 S C sing 1.76 N Y
7 C1 C2 C C doub 1.39 N Y
8 C1 C21 C C sing 1.39 N Y
9 O1 C6 O C sing 1.43 N N
10 O1 C7 O C sing 1.35 N N
11 C2 C3 C C sing 1.38 N Y
12 O2 C7 O C doub 1.22 N N
13 C3 C4 C C doub 1.38 N Y
14 O3 C15 O C sing 1.36 N N
15 O3 C16 O C sing 1.43 N N
16 C4 C5 C C sing 1.38 N Y
17 C5 C6 C C sing 1.51 N N
18 C5 C21 C C doub 1.38 N Y
19 C7 C8 C C sing 1.42 N N
20 C8 C15 C C doub 1.35 N Y
21 C9 C10 C C doub 1.4 N Y
22 C9 C14 C C sing 1.4 N Y
23 C10 C11 C C sing 1.37 N Y
24 C11 C12 C C doub 1.39 N Y
25 C12 C13 C C sing 1.36 N Y
26 C13 C14 C C doub 1.41 N Y
27 C14 C15 C C sing 1.45 N Y
28 C16 C17 C C sing 1.53 N N
29 C16 C20 C C sing 1.53 N N
30 C17 C18 C C sing 1.53 N N
31 C19 C20 C C sing 1.53 N N
32 C H C H sing 1.09 N N
33 C HA C H sing 1.09 N N
34 C HB C H sing 1.09 N N
35 N HN N H sing 1.01 N N
36 C2 H2 C H sing 1.08 N N
37 C3 H3 C H sing 1.08 N N
38 C4 H4 C H sing 1.08 N N
39 C6 H6 C H sing 1.09 N N
40 C6 H6A C H sing 1.09 N N
41 C10 H10 C H sing 1.08 N N
42 C11 H11 C H sing 1.08 N N
43 C12 H12 C H sing 1.08 N N
44 C13 H13 C H sing 1.08 N N
45 C16 H16 C H sing 1.09 N N
46 C17 H17 C H sing 1.09 N N
47 C17 H17A C H sing 1.09 N N
48 C18 H18 C H sing 1.09 N N
49 C18 H18A C H sing 1.09 N N
50 C19 H19 C H sing 1.09 N N
51 C19 H19A C H sing 1.09 N N
52 C20 H20 C H sing 1.09 N N
53 C20 H20A C H sing 1.09 N N
54 C21 H21 C H sing 1.08 N N