Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : YCK    

Bonds between two atoms of the molecule

Total Number of Bonds: 64


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C13 C11 C C sing 1.53 N N
2 C12 C11 C C sing 1.53 N N
3 C11 C10 C C sing 1.53 N N
4 C10 C08 C C sing 1.53 N N
5 C08 N09 C N sing 1.47 N N
6 C08 C07 C C sing 1.51 N N
7 C07 N06 C N sing 1.35 N N
8 C07 O14 C O doub 1.21 N N
9 N06 C05 N C sing 1.47 N N
10 C05 C04 C C sing 1.53 N N
11 C04 N03 C N sing 1.47 N N
12 O01 C02 O C doub 1.21 N N
13 N03 C02 N C sing 1.35 N N
14 C02 C15 C C sing 1.51 N N
15 C15 C16 C C sing 1.53 N N
16 C16 N17 C N sing 1.46 N N
17 N17 C18 N C sing 1.35 N N
18 O30 C18 O C doub 1.21 N N
19 C18 C19 C C sing 1.51 N N
20 C29 C21 C C sing 1.53 N N
21 C19 O20 C O sing 1.43 N N
22 C19 C21 C C sing 1.53 N N
23 C21 C28 C C sing 1.53 N N
24 C21 C22 C C sing 1.53 N N
25 C22 O23 C O sing 1.43 N N
26 O23 P24 O P sing 1.61 N N
27 O26 P24 O P sing 1.61 N N
28 P24 O25 P O doub 1.48 N N
29 N03 H031 N H sing 0.97 N N
30 C04 H041 C H sing 1.09 N N
31 C04 H042 C H sing 1.09 N N
32 C05 H051 C H sing 1.09 N N
33 C05 H052 C H sing 1.09 N N
34 N06 H061 N H sing 0.97 N N
35 C08 H081 C H sing 1.09 N N
36 N09 H091 N H sing 1.01 N N
37 N09 H2 N H sing 1.01 N N
38 C10 H101 C H sing 1.09 N N
39 C10 H102 C H sing 1.09 N N
40 C11 H111 C H sing 1.09 N N
41 C12 H122 C H sing 1.09 N N
42 C12 H121 C H sing 1.09 N N
43 C12 H123 C H sing 1.09 N N
44 C13 H131 C H sing 1.09 N N
45 C13 H132 C H sing 1.09 N N
46 C13 H133 C H sing 1.09 N N
47 C15 H151 C H sing 1.09 N N
48 C15 H152 C H sing 1.09 N N
49 C16 H161 C H sing 1.09 N N
50 C16 H162 C H sing 1.09 N N
51 N17 H171 N H sing 0.97 N N
52 C19 H191 C H sing 1.09 N N
53 O20 H201 O H sing 0.97 N N
54 C22 H222 C H sing 1.09 N N
55 C22 H221 C H sing 1.09 N N
56 O26 H4 O H sing 0.97 N N
57 C28 H281 C H sing 1.09 N N
58 C28 H283 C H sing 1.09 N N
59 C28 H282 C H sing 1.09 N N
60 C29 H293 C H sing 1.09 N N
61 C29 H291 C H sing 1.09 N N
62 C29 H292 C H sing 1.09 N N
63 P24 O1 P O sing 1.61 N N
64 O1 H1 O H sing 0.97 N N