Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : YDY    

Bonds between two atoms of the molecule

Total Number of Bonds: 73


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O36 S33 O S doub 1.42 N N
2 O34 S33 O S doub 1.42 N N
3 S33 C31 S C sing 1.81 N N
4 S33 C35 S C sing 1.81 N N
5 O19 S16 O S doub 1.42 N N
6 C31 C28 C C sing 1.53 N N
7 O32 C28 O C sing 1.43 N N
8 C11 C12 C C sing 1.54 N N
9 C11 C7 C C sing 1.54 N N
10 O18 S16 O S doub 1.42 N N
11 S16 C7 S C sing 1.81 N N
12 S16 C17 S C sing 1.76 N N
13 C3 C2 C C doub 1.38 N Y
14 C3 C4 C C sing 1.39 N Y
15 F42 C38 F C sing 1.4 N N
16 C28 C27 C C sing 1.51 N N
17 C28 C30 C C sing 1.53 N N
18 C2 C1 C C sing 1.38 N Y
19 C12 C13 C C sing 1.54 N N
20 F43 C38 F C sing 1.4 N N
21 C7 C4 C C sing 1.5 N N
22 C7 C8 C C sing 1.54 N N
23 N26 C27 N C sing 1.35 N N
24 N26 C13 N C sing 1.46 N N
25 C27 O29 C O doub 1.21 N N
26 C4 C5 C C doub 1.38 N Y
27 C38 F44 C F sing 1.4 N N
28 C38 C14 C C sing 1.53 N N
29 C17 C20 C C doub 1.38 N Y
30 C17 C24 C C sing 1.38 N Y
31 C20 C21 C C sing 1.38 N Y
32 C13 C8 C C sing 1.55 N N
33 C1 C14 C C sing 1.51 N N
34 C1 N6 C N doub 1.32 N Y
35 F41 C37 F C sing 1.4 N N
36 C8 C9 C C sing 1.53 N N
37 C24 C23 C C doub 1.38 N Y
38 C14 C37 C C sing 1.53 N N
39 C14 F15 C F sing 1.4 N N
40 C21 C22 C C doub 1.38 N Y
41 C5 N6 C N sing 1.32 N Y
42 C5 C10 C C sing 1.51 N N
43 C37 F40 C F sing 1.4 N N
44 C37 F39 C F sing 1.4 N N
45 C23 C22 C C sing 1.39 N Y
46 C22 F25 C F sing 1.35 N N
47 C9 C10 C C sing 1.53 N N
48 C2 H45 C H sing 1.08 N N
49 C3 H46 C H sing 1.08 N N
50 C8 H47 C H sing 1.09 N N
51 C9 H48 C H sing 1.09 N N
52 C9 H49 C H sing 1.09 N N
53 C10 H50 C H sing 1.09 N N
54 C10 H51 C H sing 1.09 N N
55 C11 H52 C H sing 1.09 N N
56 C11 H53 C H sing 1.09 N N
57 C12 H55 C H sing 1.09 N N
58 C12 H54 C H sing 1.09 N N
59 C13 H56 C H sing 1.09 N N
60 C20 H57 C H sing 1.08 N N
61 C21 H58 C H sing 1.08 N N
62 C23 H59 C H sing 1.08 N N
63 C24 H60 C H sing 1.08 N N
64 N26 H61 N H sing 0.97 N N
65 C30 H64 C H sing 1.09 N N
66 C30 H63 C H sing 1.09 N N
67 C30 H62 C H sing 1.09 N N
68 C31 H65 C H sing 1.09 N N
69 C31 H66 C H sing 1.09 N N
70 O32 H67 O H sing 0.97 N N
71 C35 H70 C H sing 1.09 N N
72 C35 H68 C H sing 1.09 N N
73 C35 H69 C H sing 1.09 N N