Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YHQ    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 C2 O C sing 1.43 N N
2 N3 C7 N C doub 1.32 N Y
3 N3 C6 N C sing 1.33 N Y
4 C7 N4 C N sing 1.32 N Y
5 C3 C2 C C sing 1.54 N N
6 C3 O2 C O sing 1.44 N N
7 C3 N1 C N sing 1.47 N N
8 C2 C1 C C sing 1.55 N N
9 O2 C9 O C sing 1.45 N N
10 C6 N1 C N sing 1.37 N Y
11 C6 C5 C C doub 1.4 N Y
12 N4 C8 N C doub 1.33 N Y
13 N1 C4 N C sing 1.36 N Y
14 C9 C1 C C sing 1.54 N N
15 C9 C10 C C sing 1.53 N N
16 C1 O1 C O sing 1.43 N N
17 C5 C8 C C sing 1.41 N Y
18 C5 N2 C N sing 1.35 N Y
19 C8 N5 C N sing 1.38 N N
20 O4 C10 O C sing 1.43 N N
21 O4 P1 O P sing 1.61 N N
22 C4 N2 C N doub 1.3 N Y
23 O7 P1 O P doub 1.48 N N
24 C13 C11 C C sing 1.53 N N
25 P1 O5 P O sing 1.61 N N
26 P1 O6 P O sing 1.61 N N
27 O6 C11 O C sing 1.43 N N
28 C11 C12 C C sing 1.53 N N
29 C1 H1 C H sing 1.09 N N
30 C2 H2 C H sing 1.09 N N
31 C3 H3 C H sing 1.09 N N
32 C4 H4 C H sing 1.08 N N
33 O1 H5 O H sing 0.97 N N
34 C7 H6 C H sing 1.08 N N
35 C9 H7 C H sing 1.09 N N
36 C10 H8 C H sing 1.09 N N
37 C10 H9 C H sing 1.09 N N
38 C11 H10 C H sing 1.09 N N
39 C12 H11 C H sing 1.09 N N
40 C12 H12 C H sing 1.09 N N
41 C12 H13 C H sing 1.09 N N
42 C13 H14 C H sing 1.09 N N
43 C13 H15 C H sing 1.09 N N
44 C13 H16 C H sing 1.09 N N
45 O3 H17 O H sing 0.97 N N
46 O5 H18 O H sing 0.97 N N
47 N5 H19 N H sing 0.97 N N
48 N5 H20 N H sing 0.97 N N