Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YIS    

Bonds between two atoms of the molecule

Total Number of Bonds: 87


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 C2 C C sing 1.53 N N
2 C2 C3 C C sing 1.53 N N
3 C2 C4 C C sing 1.53 N N
4 C2 C5 C C sing 1.51 N N
5 C5 C6 C C sing 1.4 N Y
6 C5 N40 C N doub 1.31 N Y
7 C6 C7 C C doub 1.36 N Y
8 C7 N8 C N sing 1.4 N N
9 C7 N39 C N sing 1.36 N Y
10 N8 C9 N C sing 1.35 N N
11 C9 O10 C O doub 1.22 N N
12 C9 N11 C N sing 1.35 N N
13 N11 C12 N C sing 1.46 N N
14 C12 C13 C C sing 1.51 N N
15 C13 C14 C C sing 1.38 N Y
16 C13 C18 C C doub 1.39 N Y
17 C14 C15 C C doub 1.38 N Y
18 C15 C16 C C sing 1.38 N Y
19 C16 C17 C C doub 1.38 N Y
20 C17 C18 C C sing 1.39 N Y
21 C18 S19 C S sing 1.76 N N
22 S19 C20 S C sing 1.76 N N
23 C20 C21 C C sing 1.41 N Y
24 C20 C38 C C doub 1.36 N Y
25 C21 C22 C C doub 1.36 N Y
26 C22 C23 C C sing 1.41 N Y
27 C23 N24 C N doub 1.33 N Y
28 C23 N37 C N sing 1.37 N Y
29 N24 N25 N N sing 1.29 N Y
30 N25 C26 N C doub 1.32 N Y
31 C26 C27 C C sing 1.48 N Y
32 C26 N37 C N sing 1.37 N Y
33 C27 C28 C C sing 1.4 N Y
34 C27 C32 C C doub 1.4 N Y
35 C28 C29 C C doub 1.38 N Y
36 C29 C30 C C sing 1.38 N Y
37 C30 C31 C C doub 1.38 N Y
38 C31 C32 C C sing 1.39 N Y
39 C32 S33 C S sing 1.76 N N
40 S33 C34 S C sing 1.81 N N
41 C34 C35 C C sing 1.53 N N
42 C35 O36 C O sing 1.43 N N
43 N37 C38 N C sing 1.36 N Y
44 N39 N40 N N sing 1.4 N Y
45 N39 C41 N C sing 1.4 N Y
46 C41 C42 C C sing 1.39 N Y
47 C41 C48 C C doub 1.39 N Y
48 C42 C43 C C doub 1.38 N Y
49 C43 C44 C C sing 1.39 N Y
50 C44 O45 C O sing 1.36 N N
51 C44 C46 C C doub 1.39 N Y
52 C46 CL C CL sing 1.74 N N
53 C46 C48 C C sing 1.38 N Y
54 C1 H11C C H sing 1.09 N N
55 C1 H12C C H sing 1.09 N N
56 C1 H13C C H sing 1.09 N N
57 C3 H31C C H sing 1.09 N N
58 C3 H32C C H sing 1.09 N N
59 C3 H33C C H sing 1.09 N N
60 C4 H41C C H sing 1.09 N N
61 C4 H42C C H sing 1.09 N N
62 C4 H43C C H sing 1.09 N N
63 C6 H6 C H sing 1.08 N N
64 N8 H8 N H sing 0.97 N N
65 N11 H11 N H sing 0.97 N N
66 C12 H121 C H sing 1.09 N N
67 C12 H122 C H sing 1.09 N N
68 C14 H14 C H sing 1.08 N N
69 C15 H15 C H sing 1.08 N N
70 C16 H16 C H sing 1.08 N N
71 C17 H17 C H sing 1.08 N N
72 C21 H21 C H sing 1.08 N N
73 C38 H38 C H sing 1.08 N N
74 C22 H22 C H sing 1.08 N N
75 C28 H28 C H sing 1.08 N N
76 C29 H29 C H sing 1.08 N N
77 C30 H30 C H sing 1.08 N N
78 C31 H31 C H sing 1.08 N N
79 C34 H341 C H sing 1.09 N N
80 C34 H342 C H sing 1.09 N N
81 C35 H351 C H sing 1.09 N N
82 C35 H352 C H sing 1.09 N N
83 O36 H36 O H sing 0.97 N N
84 C42 H42 C H sing 1.08 N N
85 C48 H48 C H sing 1.08 N N
86 C43 H43 C H sing 1.08 N N
87 O45 H45 O H sing 0.97 N N