Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YLA    

Bonds between two atoms of the molecule

Total Number of Bonds: 68


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C O C O doub 1.21 N N
2 C CA C C sing 1.51 N N
3 C OAY C O sing 1.34 N N
4 N CA N C sing 1.47 N N
5 N1 C2 N C doub 1.32 N Y
6 N1 C6 N C sing 1.33 N Y
7 O1 C3 O C sing 1.45 N N
8 O1 CBA O C sing 1.35 N N
9 C2 N3 C N sing 1.32 N Y
10 C3 C7 C C sing 1.47 N N
11 N3 C4 N C doub 1.33 N Y
12 C4 C5 C C sing 1.4 N Y
13 C4 N9 C N sing 1.37 N Y
14 C5 C6 C C doub 1.41 N Y
15 C5 N7 C N sing 1.36 N Y
16 C6 N6 C N sing 1.38 N N
17 C7 C9 C C trip 1.17 N N
18 N7 C8 N C doub 1.3 N Y
19 C8 N9 C N sing 1.36 N Y
20 N9 C1' N C sing 1.46 N N
21 CA CB C C sing 1.53 N N
22 CB CAN C C sing 1.53 N N
23 C1' C2' C C sing 1.55 N N
24 C1' O4' C O sing 1.44 N N
25 C2' O2' C O sing 1.43 N N
26 C2' C3' C C sing 1.55 N N
27 C3' O3' C O sing 1.43 N N
28 C3' C4' C C sing 1.54 N N
29 C4' O4' C O sing 1.44 N N
30 C4' C5' C C sing 1.53 N N
31 C5' O5' C O sing 1.43 N N
32 O5' PBN O P sing 1.61 N N
33 OAD CBA O C doub 1.21 N N
34 OAF PBN O P doub 1.48 N N
35 OAI PBN O P sing 1.61 N N
36 CAM CAN C C sing 1.53 N N
37 CAM CAO C C sing 1.53 N N
38 CAO NAW C N sing 1.47 N N
39 NAW CBA N C sing 1.35 N N
40 OAY PBN O P sing 1.61 N N
41 N HN N H sing 1.01 N N
42 N HNA N H sing 1.01 N N
43 C2 H2 C H sing 1.08 N N
44 C3 H3 C H sing 1.09 N N
45 C3 H3A C H sing 1.09 N N
46 N6 HN6 N H sing 0.97 N N
47 N6 HN6A N H sing 0.97 N N
48 C8 H8 C H sing 1.08 N N
49 C9 H9 C H sing 1.05 N N
50 CA HA C H sing 1.09 N N
51 CB HB C H sing 1.09 N N
52 CB HBA C H sing 1.09 N N
53 C1' H1' C H sing 1.09 N N
54 C2' H2' C H sing 1.09 N N
55 O2' HO2' O H sing 0.97 N N
56 C3' H3' C H sing 1.09 N N
57 O3' HO3' O H sing 0.97 N N
58 C4' H4' C H sing 1.09 N N
59 C5' H5' C H sing 1.09 N N
60 C5' H5'A C H sing 1.09 N N
61 CAM HAM C H sing 1.09 N N
62 CAM HAMA C H sing 1.09 N N
63 CAN HAN C H sing 1.09 N N
64 CAN HANA C H sing 1.09 N N
65 CAO HAO C H sing 1.09 N N
66 CAO HAOA C H sing 1.09 N N
67 NAW HNAW N H sing 0.97 N N
68 OAI HAI O H sing 0.97 N N