Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YMS    

Bonds between two atoms of the molecule

Total Number of Bonds: 79


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O18 C14 O C doub 1.21 N N
2 C14 N15 C N sing 1.34 N N
3 C14 C13 C C sing 1.51 N N
4 N15 C16 N C sing 1.47 N N
5 C12 C13 C C sing 1.53 N N
6 C12 C11 C C sing 1.53 N N
7 C13 C17 C C sing 1.55 N N
8 C19 C11 C C sing 1.53 N N
9 C19 O20 C O sing 1.43 N N
10 C16 C17 C C sing 1.55 N N
11 C11 N10 C N sing 1.46 N N
12 N10 C09 N C sing 1.35 N N
13 O01 C02 O C doub 1.22 N N
14 C09 C04 C C sing 1.51 N N
15 C09 O21 C O doub 1.21 N N
16 C08 C06 C C sing 1.53 N N
17 C04 C05 C C sing 1.53 N N
18 C04 N03 C N sing 1.46 N N
19 C02 N03 C N sing 1.35 N N
20 C02 O22 C O sing 1.35 N N
21 C29 C28 C C doub 1.38 N Y
22 C29 C30 C C sing 1.38 N Y
23 C28 C27 C C sing 1.38 N Y
24 C25 C24 C C sing 1.53 N N
25 C25 C26 C C sing 1.53 N N
26 C23 C24 C C sing 1.53 N N
27 C23 O22 C O sing 1.45 N N
28 C23 C34 C C sing 1.53 N N
29 C05 C06 C C sing 1.53 N N
30 C06 C07 C C sing 1.53 N N
31 C30 C31 C C doub 1.38 N Y
32 C33 C34 C C sing 1.53 N N
33 C33 C26 C C sing 1.53 N N
34 C27 C26 C C sing 1.51 N N
35 C27 C32 C C doub 1.38 N Y
36 C31 C32 C C sing 1.38 N Y
37 C04 H1 C H sing 1.09 N N
38 C05 H2 C H sing 1.09 N N
39 C05 H3 C H sing 1.09 N N
40 C06 H4 C H sing 1.09 N N
41 C07 H5 C H sing 1.09 N N
42 C07 H6 C H sing 1.09 N N
43 C07 H7 C H sing 1.09 N N
44 C08 H8 C H sing 1.09 N N
45 C08 H9 C H sing 1.09 N N
46 C08 H10 C H sing 1.09 N N
47 C11 H11 C H sing 1.09 N N
48 C12 H12 C H sing 1.09 N N
49 C12 H13 C H sing 1.09 N N
50 C13 H14 C H sing 1.09 N N
51 C16 H15 C H sing 1.09 N N
52 C16 H16 C H sing 1.09 N N
53 C17 H17 C H sing 1.09 N N
54 C17 H18 C H sing 1.09 N N
55 C19 S1 C S sing 1.81 N N
56 C19 H20 C H sing 1.09 N N
57 C23 H21 C H sing 1.09 N N
58 C24 H22 C H sing 1.09 N N
59 C24 H23 C H sing 1.09 N N
60 C25 H24 C H sing 1.09 N N
61 C25 H25 C H sing 1.09 N N
62 C26 H26 C H sing 1.09 N N
63 C28 H27 C H sing 1.08 N N
64 C29 H28 C H sing 1.08 N N
65 C30 H29 C H sing 1.08 N N
66 C31 H30 C H sing 1.08 N N
67 C32 H31 C H sing 1.08 N N
68 C33 H32 C H sing 1.09 N N
69 C33 H33 C H sing 1.09 N N
70 C34 H34 C H sing 1.09 N N
71 C34 H35 C H sing 1.09 N N
72 N03 H36 N H sing 0.97 N N
73 N10 H37 N H sing 0.97 N N
74 N15 H38 N H sing 0.97 N N
75 O20 H39 O H sing 0.97 N N
76 S1 O1 S O doub 1.42 N N
77 S1 O2 S O doub 1.42 N N
78 S1 O3 S O sing 1.52 N N
79 O3 H19 O H sing 0.97 N N