Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YPH    

Bonds between two atoms of the molecule

Total Number of Bonds: 85


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O43 C40 O C sing 1.43 N N
2 C41 C40 C C sing 1.53 N N
3 C41 C42 C C sing 1.53 N N
4 C40 C39 C C sing 1.53 N N
5 C42 N35 C N sing 1.47 N N
6 C39 C38 C C sing 1.53 N N
7 N35 C38 N C sing 1.47 N N
8 N35 C36 N C sing 1.47 N N
9 C36 C37 C C sing 1.53 N N
10 O34 C37 O C sing 1.43 N N
11 O34 C9 O C sing 1.36 N N
12 C8 C9 C C doub 1.39 N Y
13 C8 C7 C C sing 1.38 N Y
14 C9 C10 C C sing 1.39 N Y
15 C7 C6 C C doub 1.4 N Y
16 C10 C11 C C doub 1.38 N Y
17 C6 C11 C C sing 1.4 N Y
18 C6 C2 C C sing 1.48 N N
19 C1 C2 C C doub 1.36 N Y
20 C1 C5 C C sing 1.46 N Y
21 C2 O3 C O sing 1.35 N Y
22 N44 C16 N C sing 1.47 N N
23 N44 C15 N C sing 1.38 N N
24 C5 C15 C C sing 1.4 N Y
25 C5 C4 C C doub 1.41 N Y
26 O3 C4 O C sing 1.34 N Y
27 C16 C17 C C sing 1.53 N N
28 C23 C22 C C doub 1.38 N Y
29 C23 C18 C C sing 1.38 N Y
30 C15 N14 C N doub 1.33 N Y
31 C31 C32 C C doub 1.38 N Y
32 C31 C30 C C sing 1.38 N Y
33 C17 C18 C C sing 1.51 N N
34 C4 N12 C N sing 1.33 N Y
35 C22 C21 C C sing 1.39 N Y
36 O33 C25 O C doub 1.22 N N
37 C32 C27 C C sing 1.39 N Y
38 C18 C19 C C doub 1.38 N Y
39 C30 C29 C C doub 1.38 N Y
40 N14 C13 N C sing 1.32 N Y
41 C25 N26 C N sing 1.35 N N
42 C25 N24 C N sing 1.35 N N
43 C27 N26 C N sing 1.4 N N
44 C27 C28 C C doub 1.39 N Y
45 N12 C13 N C doub 1.32 N Y
46 C21 N24 C N sing 1.4 N N
47 C21 C20 C C doub 1.39 N Y
48 C29 C28 C C sing 1.38 N Y
49 C19 C20 C C sing 1.38 N Y
50 C38 H1 C H sing 1.09 N N
51 C38 H2 C H sing 1.09 N N
52 C39 H3 C H sing 1.09 N N
53 C39 H4 C H sing 1.09 N N
54 C40 H5 C H sing 1.09 N N
55 O43 H6 O H sing 0.97 N N
56 C41 H7 C H sing 1.09 N N
57 C41 H8 C H sing 1.09 N N
58 C42 H9 C H sing 1.09 N N
59 C42 H10 C H sing 1.09 N N
60 C36 H12 C H sing 1.09 N N
61 C36 H13 C H sing 1.09 N N
62 C37 H14 C H sing 1.09 N N
63 C37 H15 C H sing 1.09 N N
64 C8 H16 C H sing 1.08 N N
65 C7 H17 C H sing 1.08 N N
66 C10 H18 C H sing 1.08 N N
67 C11 H19 C H sing 1.08 N N
68 C1 H20 C H sing 1.08 N N
69 C13 H21 C H sing 1.08 N N
70 N44 H22 N H sing 0.97 N N
71 C16 H23 C H sing 1.09 N N
72 C16 H24 C H sing 1.09 N N
73 C17 H25 C H sing 1.09 N N
74 C17 H26 C H sing 1.09 N N
75 C19 H27 C H sing 1.08 N N
76 C20 H28 C H sing 1.08 N N
77 C23 H29 C H sing 1.08 N N
78 C22 H30 C H sing 1.08 N N
79 N24 H31 N H sing 0.97 N N
80 N26 H32 N H sing 0.97 N N
81 C28 H33 C H sing 1.08 N N
82 C29 H34 C H sing 1.08 N N
83 C30 H35 C H sing 1.08 N N
84 C31 H36 C H sing 1.08 N N
85 C32 H37 C H sing 1.08 N N