Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : YRB    

Bonds between two atoms of the molecule

Total Number of Bonds: 128


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O04 C14 O C doub 1.21 N N
2 C15 C13 C C sing 1.53 N N
3 C14 C13 C C sing 1.51 N N
4 C14 N04 C N sing 1.36 N N
5 C23 N04 C N sing 1.47 N N
6 C22 C20 C C sing 1.53 N N
7 C13 N03 C N sing 1.48 N N
8 N04 C17 N C sing 1.48 N N
9 C16 N03 C N sing 1.47 N N
10 N03 C08 N C sing 1.37 N N
11 C20 C19 C C sing 1.53 N N
12 C20 C21 C C sing 1.53 N N
13 C17 C19 C C sing 1.53 N N
14 C17 C18 C C sing 1.51 N N
15 C19 O09 C O sing 1.43 N N
16 C08 O03 C O doub 1.21 N N
17 C08 C07 C C sing 1.5 N N
18 C11 C09 C C sing 1.53 N N
19 C09 C07 C C sing 1.53 N N
20 C09 C10 C C sing 1.53 N N
21 C38 C27 C C sing 1.53 N N
22 C38 C37 C C sing 1.53 N N
23 C18 O05 C O doub 1.21 N N
24 C18 N05 C N sing 1.37 N N
25 C28 C27 C C sing 1.53 N N
26 C27 C26 C C sing 1.53 N N
27 C07 N02 C N sing 1.48 N N
28 C12 C10 C C sing 1.53 N N
29 N05 C24 N C sing 1.48 N N
30 C24 C26 C C sing 1.53 N N
31 C24 C25 C C sing 1.51 N N
32 N02 C02 N C sing 1.37 N N
33 O01 C02 O C doub 1.21 N N
34 C02 C01 C C sing 1.5 N N
35 O02 C03 O C sing 1.43 N N
36 C25 O06 C O doub 1.21 N N
37 C25 N06 C N sing 1.36 N N
38 C03 C01 C C sing 1.53 N N
39 C03 C04 C C sing 1.53 N N
40 C01 N01 C N sing 1.48 N N
41 C32 N06 C N sing 1.47 N N
42 N06 C29 N C sing 1.47 N N
43 N01 C34 N C sing 1.36 N N
44 C04 C06 C C sing 1.53 N N
45 C04 C05 C C sing 1.53 N N
46 C29 C30 C C sing 1.51 N N
47 C29 C31 C C sing 1.53 N N
48 O07 C30 O C doub 1.21 N N
49 C30 N07 C N sing 1.35 N N
50 C34 O08 C O doub 1.21 N N
51 C34 C33 C C sing 1.49 N N
52 N07 C36 N C sing 1.47 N N
53 N07 C33 N C sing 1.47 N N
54 C36 C40 C C sing 1.53 N N
55 C33 C35 C C sing 1.54 N N
56 C40 C39 C C sing 1.52 N N
57 C35 C39 C C sing 1.52 N N
58 C01 H1 C H sing 1.09 N N
59 N01 H2 N H sing 0.97 N N
60 N02 H3 N H sing 0.97 N N
61 O02 H4 O H sing 0.97 N N
62 C03 H5 C H sing 1.09 N N
63 C04 H6 C H sing 1.09 N N
64 C05 H7 C H sing 1.09 N N
65 C05 H8 C H sing 1.09 N N
66 C05 H9 C H sing 1.09 N N
67 N05 H10 N H sing 0.97 N N
68 C06 H11 C H sing 1.09 N N
69 C06 H12 C H sing 1.09 N N
70 C06 H13 C H sing 1.09 N N
71 C07 H14 C H sing 1.09 N N
72 C09 H15 C H sing 1.09 N N
73 C10 H16 C H sing 1.09 N N
74 C10 H17 C H sing 1.09 N N
75 C11 H18 C H sing 1.09 N N
76 C11 H19 C H sing 1.09 N N
77 C11 H20 C H sing 1.09 N N
78 C12 H21 C H sing 1.09 N N
79 C12 H22 C H sing 1.09 N N
80 C12 H23 C H sing 1.09 N N
81 C13 H24 C H sing 1.09 N N
82 C15 H25 C H sing 1.09 N N
83 C15 H26 C H sing 1.09 N N
84 C15 H27 C H sing 1.09 N N
85 C16 H28 C H sing 1.09 N N
86 C16 H29 C H sing 1.09 N N
87 C16 H30 C H sing 1.09 N N
88 C17 H31 C H sing 1.09 N N
89 C19 H32 C H sing 1.09 N N
90 C20 H33 C H sing 1.09 N N
91 C21 H34 C H sing 1.09 N N
92 C21 H35 C H sing 1.09 N N
93 C21 H36 C H sing 1.09 N N
94 C22 H37 C H sing 1.09 N N
95 C22 H38 C H sing 1.09 N N
96 C22 H39 C H sing 1.09 N N
97 C23 H40 C H sing 1.09 N N
98 C23 H41 C H sing 1.09 N N
99 C23 H42 C H sing 1.09 N N
100 C24 H43 C H sing 1.09 N N
101 C26 H44 C H sing 1.09 N N
102 C26 H45 C H sing 1.09 N N
103 C27 H46 C H sing 1.09 N N
104 C28 H47 C H sing 1.09 N N
105 C28 H48 C H sing 1.09 N N
106 C28 H49 C H sing 1.09 N N
107 C29 H50 C H sing 1.09 N N
108 C31 H51 C H sing 1.09 N N
109 C31 H52 C H sing 1.09 N N
110 C31 H53 C H sing 1.09 N N
111 C32 H54 C H sing 1.09 N N
112 C32 H55 C H sing 1.09 N N
113 C32 H56 C H sing 1.09 N N
114 C33 H57 C H sing 1.1 N N
115 C35 H58 C H sing 1.09 N N
116 C35 H59 C H sing 1.09 N N
117 C36 H60 C H sing 1.09 N N
118 C36 H61 C H sing 1.09 N N
119 C37 H62 C H sing 1.09 N N
120 C37 H63 C H sing 1.09 N N
121 C37 H64 C H sing 1.09 N N
122 C38 H65 C H sing 1.09 N N
123 C38 H66 C H sing 1.09 N N
124 C39 H67 C H sing 1.09 N N
125 C39 H68 C H sing 1.09 N N
126 C40 H69 C H sing 1.09 N N
127 C40 H70 C H sing 1.09 N N
128 O09 H71 O H sing 0.97 N N