Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : Z98    

Bonds between two atoms of the molecule

Total Number of Bonds: 41


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OXT C O C doub 1.21 N N
2 CA C C C sing 1.51 N N
3 C O C O sing 1.34 N N
4 CA N C N sing 1.47 N N
5 N HN N H sing 1.01 N N
6 N HNA N H sing 1.01 N N
7 O HO O H sing 0.97 N N
8 OP2 P O P doub 1.48 N N
9 OP3 P O P sing 1.61 N N
10 P OP1 P O sing 1.61 N N
11 P OP4 P O sing 1.61 N N
12 C6 N1 C N doub 1.32 N Y
13 N1 C2 N C sing 1.32 N Y
14 C2 C2A C C sing 1.51 N N
15 C2 C3 C C doub 1.39 N Y
16 C3 C4 C C sing 1.4 N Y
17 C3 O3 C O sing 1.36 N N
18 O3 HO3 O H sing 0.97 N N
19 C5 C4 C C doub 1.4 N Y
20 C4 C4A C C sing 1.48 N N
21 C6 C5 C C sing 1.38 N Y
22 C5A C5 C C sing 1.51 N N
23 C6 H6 C H sing 1.08 N N
24 CB CA C C sing 1.53 N N
25 CA HA C H sing 1.09 N N
26 CG CB C C sing 1.53 N N
27 CB HB C H sing 1.09 N N
28 CB HBA C H sing 1.09 N N
29 C4A ND C N doub 1.29 N N
30 ND CG N C sing 1.46 N N
31 CG HG C H sing 1.09 N N
32 CG HGA C H sing 1.09 N N
33 C2A H2A C H sing 1.09 N N
34 C2A H2AA C H sing 1.09 N N
35 C2A H2AB C H sing 1.09 N N
36 C4A H4A C H sing 1.08 N N
37 OP4 C5A O C sing 1.43 N N
38 C5A H5A C H sing 1.09 N N
39 C5A H5AA C H sing 1.09 N N
40 OP1 HOP1 O H sing 0.97 N N
41 OP3 HOP3 O H sing 0.97 N N