Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : ZAF    

Bonds between two atoms of the molecule

Total Number of Bonds: 61


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C1 O1A C O doub 1.21 N N
2 C1 O1B C O sing 1.34 N N
3 C1 C2 C C sing 1.51 N N
4 O1B HOB1 O H sing 0.97 N N
5 C2A C2 C C sing 1.53 N N
6 C2A CP1 C C sing 1.51 N N
7 C2A H2A1 C H sing 1.09 N N
8 C2A H2A2 C H sing 1.09 N N
9 C2 O3 C O sing 1.43 N N
10 C2 H2 C H sing 1.09 N N
11 CP1 CP2 C C doub 1.38 N Y
12 CP1 CP6 C C sing 1.38 N Y
13 CP2 CP3 C C sing 1.38 N Y
14 CP2 HP2 C H sing 1.08 N N
15 CP3 CP4 C C doub 1.38 N Y
16 CP3 HP3 C H sing 1.08 N N
17 CP4 CP5 C C sing 1.38 N Y
18 CP4 HP4 C H sing 1.08 N N
19 CP5 CP6 C C doub 1.38 N Y
20 CP5 HP5 C H sing 1.08 N N
21 CP6 HP6 C H sing 1.08 N N
22 O3 P3 O P sing 1.61 N N
23 P3 O3A P O doub 1.48 N N
24 P3 O3B P O sing 1.61 N N
25 P3 C4 P C sing 1.82 N N
26 O3B HOB3 O H sing 0.97 N N
27 C4 C4A C C sing 1.53 N N
28 C4 N5 C N sing 1.46 N N
29 C4 H4 C H sing 1.09 N N
30 C4A H4A1 C H sing 1.09 N N
31 C4A H4A2 C H sing 1.09 N N
32 C4A H4A3 C H sing 1.09 N N
33 N5 C6 N C sing 1.35 N N
34 N5 HN5 N H sing 0.97 N N
35 C6 O6 C O doub 1.21 N N
36 C6 C7 C C sing 1.51 N N
37 C7 C7A C C sing 1.53 N N
38 C7 N8 C N sing 1.47 N N
39 C7 H7 C H sing 1.09 N N
40 C7A H7A1 C H sing 1.09 N N
41 C7A H7A2 C H sing 1.09 N N
42 C7A H7A3 C H sing 1.09 N N
43 N8 C9 N C sing 1.35 N N
44 N8 HN8 N H sing 0.97 N N
45 C9 O9 C O doub 1.22 N N
46 C9 O10 C O sing 1.35 N N
47 O10 C11 O C sing 1.45 N N
48 C11 C1X C C sing 1.51 N N
49 C11 H111 C H sing 1.09 N N
50 C11 H112 C H sing 1.09 N N
51 C1X C2X C C doub 1.38 N Y
52 C1X C6X C C sing 1.38 N Y
53 C2X C3X C C sing 1.38 N Y
54 C2X HP2' C H sing 1.08 N N
55 C3X C4X C C doub 1.38 N Y
56 C3X HP3' C H sing 1.08 N N
57 C4X C5X C C sing 1.38 N Y
58 C4X HP4' C H sing 1.08 N N
59 C5X C6X C C doub 1.38 N Y
60 C5X HP5' C H sing 1.08 N N
61 C6X HP6' C H sing 1.08 N N