Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : ZOZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 114


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OAP CAP O C sing 1.43 N N
2 CAP C9P C C sing 1.51 N N
3 CAP CBP C C sing 1.53 N N
4 C9P O9P C O doub 1.21 N N
5 C9P N8P C N sing 1.35 N N
6 N8P C7P N C sing 1.47 N N
7 C7P C6P C C sing 1.53 N N
8 C6P C5P C C sing 1.51 N N
9 C5P O5P C O doub 1.21 N N
10 C5P N4P C N sing 1.35 N N
11 N4P C3P N C sing 1.47 N N
12 C3P C2P C C sing 1.53 N N
13 C2P S1P C S sing 1.81 N N
14 S1P C1' S C sing 1.71 N N
15 C1' O1' C O doub 1.21 N N
16 C1' C2' C C sing 1.51 N N
17 C2' C3' C C sing 1.51 N N
18 C3' O3' C O doub 1.21 N N
19 C3' C4' C C sing 1.51 N N
20 C4' C5' C C sing 1.53 N N
21 C5' C6' C C sing 1.53 N N
22 C6' C7' C C sing 1.53 N N
23 C7' C8' C C sing 1.53 N N
24 C8' C9' C C sing 1.53 N N
25 C9' C10 C C sing 1.53 N N
26 CBP CDP C C sing 1.53 N N
27 CBP CEP C C sing 1.53 N N
28 CBP CCP C C sing 1.53 N N
29 CCP O6A C O sing 1.43 N N
30 O6A P2A O P sing 1.61 N N
31 P2A O4A P O doub 1.48 N N
32 P2A O5A P O sing 1.61 N N
33 P2A O3A P O sing 1.61 N N
34 O3A P1A O P sing 1.61 N N
35 P1A O1A P O sing 1.61 N N
36 P1A O2A P O doub 1.48 N N
37 P1A O5B P O sing 1.61 N N
38 O5B C5B O C sing 1.43 N N
39 C5B C4B C C sing 1.53 N N
40 C4B O4B C O sing 1.44 N N
41 C4B C3B C C sing 1.54 N N
42 O4B C1B O C sing 1.44 N N
43 C1B N9A C N sing 1.47 N N
44 C1B C2B C C sing 1.55 N N
45 N9A C8A N C sing 1.36 N Y
46 N9A C4A N C sing 1.37 N Y
47 C8A N7A C N doub 1.3 N Y
48 N7A C5A N C sing 1.35 N Y
49 C5A C4A C C sing 1.41 N Y
50 C5A C6A C C doub 1.4 N Y
51 C4A N3A C N doub 1.33 N Y
52 N3A C2A N C sing 1.32 N Y
53 C2A N1A C N doub 1.32 N Y
54 N1A C6A N C sing 1.33 N Y
55 C6A N6A C N sing 1.38 N N
56 C2B O2B C O sing 1.43 N N
57 C2B C3B C C sing 1.55 N N
58 C3B O3B C O sing 1.43 N N
59 O3B P3B O P sing 1.61 N N
60 P3B O9A P O sing 1.61 N N
61 P3B O8A P O doub 1.48 N N
62 P3B O7A P O sing 1.61 N N
63 OAP HAP O H sing 0.97 N N
64 CAP HA C H sing 1.09 N N
65 N8P H8P N H sing 0.97 N N
66 C7P H7P1 C H sing 1.09 N N
67 C7P H7P2 C H sing 1.09 N N
68 C6P H6P1 C H sing 1.09 N N
69 C6P H6P2 C H sing 1.09 N N
70 N4P H4P N H sing 0.97 N N
71 C3P H3P1 C H sing 1.09 N N
72 C3P H3P2 C H sing 1.09 N N
73 C2P H2P1 C H sing 1.09 N N
74 C2P H2P2 C H sing 1.09 N N
75 C2' H2'1 C H sing 1.09 N N
76 C2' H2'2 C H sing 1.09 N N
77 C4' H4'1 C H sing 1.09 N N
78 C4' H4'2 C H sing 1.09 N N
79 C5' H5'1 C H sing 1.09 N N
80 C5' H5'2 C H sing 1.09 N N
81 C6' H6'1 C H sing 1.09 N N
82 C6' H6'2 C H sing 1.09 N N
83 C7' H7'1 C H sing 1.09 N N
84 C7' H7'2 C H sing 1.09 N N
85 C8' H8'1 C H sing 1.09 N N
86 C8' H8'2 C H sing 1.09 N N
87 C9' H9'1 C H sing 1.09 N N
88 C9' H9'2 C H sing 1.09 N N
89 C10 H101 C H sing 1.09 N N
90 C10 H102 C H sing 1.09 N N
91 C10 H103 C H sing 1.09 N N
92 CDP HDP1 C H sing 1.09 N N
93 CDP HDP2 C H sing 1.09 N N
94 CDP HDP3 C H sing 1.09 N N
95 CEP HEP1 C H sing 1.09 N N
96 CEP HEP2 C H sing 1.09 N N
97 CEP HEP3 C H sing 1.09 N N
98 CCP HCP1 C H sing 1.09 N N
99 CCP HCP2 C H sing 1.09 N N
100 O5A H5A O H sing 0.97 N N
101 O1A H1A O H sing 0.97 N N
102 C5B H5B1 C H sing 1.09 N N
103 C5B H5B2 C H sing 1.09 N N
104 C4B H4B C H sing 1.09 N N
105 C3B H3B C H sing 1.09 N N
106 C1B H1B C H sing 1.09 N N
107 C2B H2B C H sing 1.09 N N
108 C8A H8A C H sing 1.08 N N
109 C2A H2A C H sing 1.08 N N
110 N6A H6A1 N H sing 0.97 N N
111 N6A H6A2 N H sing 0.97 N N
112 O2B HB O H sing 0.97 N N
113 O9A H9A O H sing 0.97 N N
114 O7A H7A O H sing 0.97 N N