Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : ZY3    

Bonds between two atoms of the molecule

Total Number of Bonds: 84


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3 C13 O C doub 1.22 N N
2 C13 C5 C C sing 1.48 N N
3 C13 N3 C N sing 1.35 N N
4 C5 C6 C C sing 1.39 N Y
5 C5 C4 C C doub 1.39 N Y
6 C6 C7 C C doub 1.39 N Y
7 C7 C12 C C sing 1.39 N Y
8 C7 N2 C N sing 1.39 N N
9 C12 C11 C C sing 1.51 N N
10 C12 C3 C C doub 1.4 N Y
11 C11 C10 C C sing 1.53 N N
12 C10 C9 C C sing 1.55 N N
13 C9 S C S sing 1.82 N N
14 S O1 S O doub 1.42 N N
15 S O2 S O doub 1.42 N N
16 S N2 S N sing 1.66 N N
17 N2 C8 N C sing 1.47 N N
18 C4 C3 C C sing 1.38 N Y
19 C3 N1 C N sing 1.4 N N
20 N1 C2 N C sing 1.46 N N
21 C2 C1 C C sing 1.53 N N
22 N3 C14 N C sing 1.46 N N
23 C14 C15 C C sing 1.53 N N
24 C14 C22 C C sing 1.53 N N
25 C15 C16 C C sing 1.51 N N
26 C16 C21 C C sing 1.38 N Y
27 C16 C17 C C doub 1.38 N Y
28 C21 C20 C C doub 1.38 N Y
29 C20 C19 C C sing 1.38 N Y
30 C19 C18 C C doub 1.38 N Y
31 C18 C17 C C sing 1.38 N Y
32 C22 O4 C O sing 1.43 N N
33 C22 C23 C C sing 1.53 N N
34 C23 N4 C N sing 1.47 N N
35 N4 C24 N C sing 1.47 N N
36 C24 C25 C C sing 1.51 N N
37 C25 C31 C C sing 1.38 N Y
38 C25 C26 C C doub 1.38 N Y
39 C31 C29 C C doub 1.39 N Y
40 C29 O5 C O sing 1.36 N N
41 C29 C28 C C sing 1.39 N Y
42 O5 C30 O C sing 1.43 N N
43 C28 C27 C C doub 1.38 N Y
44 C27 C26 C C sing 1.38 N Y
45 N3 H3 N H sing 0.97 N N
46 C6 H6 C H sing 1.08 N N
47 C4 H4 C H sing 1.08 N N
48 C11 H111 C H sing 1.09 N N
49 C11 H112 C H sing 1.09 N N
50 C10 H101 C H sing 1.09 N N
51 C10 H102 C H sing 1.09 N N
52 C9 H91C C H sing 1.09 N N
53 C9 H92C C H sing 1.09 N N
54 C8 H81C C H sing 1.09 N N
55 C8 H82C C H sing 1.09 N N
56 C8 H83C C H sing 1.09 N N
57 N1 H1 N H sing 0.97 N N
58 C2 H21C C H sing 1.09 N N
59 C2 H22C C H sing 1.09 N N
60 C1 H11C C H sing 1.09 N N
61 C1 H12C C H sing 1.09 N N
62 C1 H13C C H sing 1.09 N N
63 C14 H14 C H sing 1.09 N N
64 C15 H151 C H sing 1.09 N N
65 C15 H152 C H sing 1.09 N N
66 C22 H22 C H sing 1.09 N N
67 C21 H21 C H sing 1.08 N N
68 C17 H17 C H sing 1.08 N N
69 C20 H20 C H sing 1.08 N N
70 C19 H19 C H sing 1.08 N N
71 C18 H18 C H sing 1.08 N N
72 O4 HA O H sing 0.97 N N
73 C23 H231 C H sing 1.09 N N
74 C23 H232 C H sing 1.09 N N
75 N4 HB N H sing 1.01 N N
76 C24 H241 C H sing 1.09 N N
77 C24 H242 C H sing 1.09 N N
78 C31 H31 C H sing 1.08 N N
79 C26 H26 C H sing 1.08 N N
80 C28 H28 C H sing 1.08 N N
81 C30 H301 C H sing 1.09 N N
82 C30 H302 C H sing 1.09 N N
83 C30 H303 C H sing 1.09 N N
84 C27 H27 C H sing 1.08 N N