Chemical Components in the PDB

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O31 : Summary

Code

O31

One-letter code

X

Molecule name

(3aR,7S,10S,12R,21E,24aR)-7-tert-butyl-N-[(1R,2R)-2-(difluoromethyl)-1-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}cyclop ropyl]-20,20-difluoro-5,8-dioxo-2,3,3a,5,6,7,8,11,12,20,23,24a-dodecahydro-1H,10H-9,12-methanocyclopenta[18,19][1,10,17, 3,6]trioxadiazacyclononadecino[11,12-b]quinoxaline-10-carboxamide

Systematic names

ProgramVersionName
ACDLabs 12.01 (3aR,7S,10S,12R,21E,24aR)-7-tert-butyl-N-[(1R,2R)-2-(difluoromethyl)-1-{[(1-methylcyclopropyl)sulfonyl]carbamoyl}cyclopropyl]-20,20-difluoro-5,8-dioxo-2,3,3a,5,6,7,8,11,12,20,23,24a-dodecahydro-1H,10H-9,12-methanocyclopenta[18,19][1,10,17,3,6]trioxadiazacyclononadecino[11,12-b]quinoxaline-10-carboxamide

Formula

C38 H46 F4 N6 O9 S

Formal charge

0

Molecular weight

838.865 Da

SMILES

TypeProgramVersionDescriptor
SMILES ACDLabs 12.01 C7(C(C(NS(C1(C)CC1)(=O)=O)=O)(NC(C3CC4Oc6c(C(C=CCOC2C(CCC2)OC(=O)NC(C(N3C4)=O)C(C)(C)C)(F)F)nc5ccccc5n6)=O)C7)C(F)F
SMILES CACTVS 3.385 CC(C)(C)[CH]1NC(=O)O[CH]2CCC[CH]2OCC=CC(F)(F)c3nc4ccccc4nc3O[CH]5C[CH]([N](C5)C1=O)C(=O)N[C]6(C[CH]6C(F)F)C(=O)N[S](=O)(=O)C7(C)CC7
SMILES OpenEye OEToolkits 2.0.7 CC1(CC1)S(=O)(=O)NC(=O)C2(CC2C(F)F)NC(=O)C3CC4CN3C(=O)C(NC(=O)OC5CCCC5OCC=CC(c6c(nc7ccccc7n6)O4)(F)F)C(C)(C)C
Canonical SMILES CACTVS 3.385 CC(C)(C)[C@@H]1NC(=O)O[C@@H]2CCC[C@H]2OC/C=C/C(F)(F)c3nc4ccccc4nc3O[C@@H]5C[C@H]([N@](C5)C1=O)C(=O)N[C@@]6(C[C@H]6C(F)F)C(=O)N[S](=O)(=O)C7(C)CC7
Canonical SMILES OpenEye OEToolkits 2.0.7 CC1(CC1)S(=O)(=O)NC(=O)[C@]2(C[C@H]2C(F)F)NC(=O)[C@@H]3C[C@@H]4CN3C(=O)[C@@H](NC(=O)O[C@@H]5CCC[C@H]5OC/C=C/C(c6c(nc7ccccc7n6)O4)(F)F)C(C)(C)C

IUPAC InChI

InChI=1S/C38H46F4N6O9S/c1-35(2,3)28-32(50)48-19-20(17-24(48)30(49)46-37(18-21(37)29(39)40)33(51)47-58(53,54)36(4)14-15-36)56-31-27(43-22-9-5-6-10-23(22)44-31)38(41,42)13-8-16-55-25-11-7-12-26(25)57-34(52)45-28/h5-6,8-10,13,20-21,24-26,28-29H,7,11-12,14-19H2,1-4H3,(H,45,52)(H,46,49)(H,47,51)/b13-8+/t20-,21+,24+,25-,26-,28-,37-/m1/s1

IUPAC InChI key

MLSQGNCUYAMAHD-ITNVBOSISA-N
O31

wwPDB Information

Atom count

104 (58 without Hydrogen)

Polymer type

Bound ligand

Type description

NON-POLYMER

Type code

HETAIN

Is modified

No

Standard parent

Not Assigned

Defined at

2019-06-05

Last modified at

2020-06-17

Status

Released

Obsoleted

Not Assigned



O31 : Atoms of Molecule

Total Number of Atoms: 104
Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C13 C C1 R N N 0 5.124 -2.374 -1.893
2 C20 C C2 S N N 0 1.109 -0.207 -1.648
3 C21 C C3 N N N 0 1.148 1.3 -1.347
4 C22 C C4 R N N 0 -0.032 1.526 -0.378
5 C01 C C5 N N N 0 4.818 2.882 0.7
6 C02 C C6 N N N 0 5.995 2.279 1.47
7 C03 C C7 N N N 0 6.725 3.184 2.465
8 C04 C C8 N N N 0 7.395 2.802 1.143
9 C09 C C9 N N N 0 5.575 -0.167 -0.602
10 C11 C C10 R N N 0 4.877 -0.873 -1.737
11 C12 C C11 N N N 0 5.744 -1.389 -2.887
12 C14 C C12 N N N 0 6.061 -3.045 -0.887
13 C18 C C13 N N N 0 2.468 -0.803 -1.38
14 C23 C C14 N N N 0 -0.309 0.134 0.226
15 C25 C C15 N N N 0 -0.347 -2.099 -0.903
16 C27 C C16 S N N 0 -1.285 -2.671 0.128
17 C29 C C17 N N N 0 -3.694 -2.762 0.307
18 C32 C C18 R N N 0 -6.056 -2.806 0.684
19 C33 C C19 N N N 0 -6.622 -4.185 1.033
20 C34 C C20 N N N 0 -8.084 -4.217 0.581
21 C35 C C21 N N N 0 -8.357 -2.94 -0.214
22 C36 C C22 R N N 0 -7.15 -2.013 -0.032
23 C38 C C23 N N N 0 -7.196 0.378 0.147
24 C39 C C24 N N N 0 -5.707 0.553 0.19
25 C40 C C25 N N N 0 -5.125 1.734 0.207
26 C41 C C26 N N N 0 -3.622 1.746 0.249
27 C42 C C27 N Y N 0 -3.031 3.078 -0.103
28 C44 C C28 N Y N 0 -3.097 5.372 -0.108
29 C45 C C29 N Y N 0 -3.739 6.585 0.192
30 C46 C C30 N Y N 0 -3.138 7.764 -0.119
31 C47 C C31 N Y N 0 -1.889 7.8 -0.736
32 C48 C C32 N Y N 0 -1.236 6.646 -1.054
33 C49 C C33 N Y N 0 -1.835 5.41 -0.751
34 C51 C C34 N Y N 0 -1.791 3.11 -0.767
35 C55 C C35 N N N 0 -0.712 -3.992 0.649
36 C56 C C36 N N N 0 -1.582 -4.507 1.798
37 C57 C C37 N N N 0 -0.697 -5.022 -0.482
38 C58 C C38 N N N 0 0.715 -3.766 1.151
39 F15 F F1 N N N 0 5.547 -2.888 0.405
40 F16 F F2 N N N 0 6.167 -4.408 -1.184
41 F53 F F3 N N N 0 -3.208 1.393 1.539
42 N24 N N3 N N N 0 0.112 -0.838 -0.784
43 F54 F F4 N N N 0 -3.154 0.783 -0.652
44 N08 N N1 N N N 0 5.011 -0.138 0.622
45 N17 N N2 N N N 0 3.542 -0.369 -2.069
46 N28 N N4 N N N 0 -2.601 -2.916 -0.493
47 N43 N N5 N Y N 0 -3.652 4.194 0.201
48 N50 N N6 N Y N 0 -1.225 4.263 -1.068
49 O06 O O1 N N N 0 7.103 -0.116 1.864
50 O07 O O2 N N N 0 4.958 0.357 3.004
51 O10 O O3 N N N 0 6.643 0.375 -0.791
52 O19 O O4 N N N 0 2.594 -1.673 -0.545
53 O26 O O5 N N N 0 -0.006 -2.788 -1.843
54 O30 O O6 N N N 0 -3.564 -2.449 1.473
55 O31 O O7 N N N 0 -4.92 -2.958 -0.208
56 O37 O O8 N N N 0 -7.543 -0.878 0.743
57 O52 O O9 N N N 0 -1.173 1.962 -1.11
58 S05 S S1 N N N 0 5.834 0.524 1.897
59 H131 H H1 N N N 0 4.294 -2.987 -2.244
60 H201 H H2 N N N 0 0.841 -0.36 -2.693
61 H212 H H3 N N N 0 2.089 1.569 -0.867
62 H211 H H4 N N N 0 1.006 1.876 -2.26
63 H221 H H5 N N N 0 0.235 2.233 0.4
64 H012 H H6 N N N 0 4.053 3.211 1.403
65 H013 H H7 N N N 0 5.165 3.734 0.115
66 H011 H H8 N N N 0 4.398 2.129 0.032
67 H031 H H9 N N N 0 6.367 4.208 2.57
68 H032 H H10 N N N 0 7.109 2.724 3.375
69 H042 H H11 N N N 0 8.22 2.09 1.184
70 H041 H H12 N N N 0 7.478 3.574 0.379
71 H122 H H13 N N N 0 6.818 -1.219 -2.823
72 H121 H H14 N N N 0 5.321 -1.354 -3.891
73 H141 H H15 N N N 0 7.047 -2.583 -0.944
74 H231 H H16 N N N 0 0.276 0.002 1.133
75 H232 H H17 N N N 0 -1.369 0.022 0.433
76 H271 H H18 N N N 0 -1.39 -1.971 0.955
77 H321 H H19 N N N 0 -5.76 -2.28 1.587
78 H332 H H20 N N N 0 -6.057 -4.957 0.512
79 H331 H H21 N N N 0 -6.564 -4.346 2.109
80 H342 H H22 N N N 0 -8.256 -5.089 -0.051
81 H341 H H23 N N N 0 -8.739 -4.256 1.451
82 H352 H H24 N N N 0 -8.483 -3.179 -1.269
83 H351 H H25 N N N 0 -9.255 -2.453 0.166
84 H361 H H26 N N N 0 -6.791 -1.689 -1.01
85 H382 H H27 N N N 0 -7.676 1.186 0.698
86 H381 H H28 N N N 0 -7.537 0.392 -0.888
87 H391 H H29 N N N 0 -5.074 -0.327 0.206
88 H401 H H30 N N N 0 -5.699 2.64 0.194
89 H451 H H31 N N N 0 -4.708 6.58 0.67
90 H461 H H32 N N N 0 -3.638 8.692 0.117
91 H471 H H33 N N N 0 -1.434 8.752 -0.967
92 H481 H H34 N N N 0 -0.268 6.68 -1.532
93 H563 H H35 N N N 0 -1.174 -5.448 2.168
94 H562 H H36 N N N 0 -1.592 -3.773 2.603
95 H561 H H37 N N N 0 -2.598 -4.668 1.439
96 H571 H H38 N N N 0 0.057 -4.744 -1.218
97 H573 H H39 N N N 0 -0.462 -6.005 -0.074
98 H572 H H40 N N N 0 -1.677 -5.052 -0.959
99 H583 H H41 N N N 0 1.335 -3.399 0.333
100 H582 H H42 N N N 0 0.705 -3.032 1.957
101 H581 H H43 N N N 0 1.123 -4.707 1.522
102 H081 H H44 N N N 0 4.123 -0.504 0.755
103 H171 H H45 N N N 0 3.431 0.277 -2.784
104 H281 H H46 N N N 0 -2.686 -3.178 -1.424



O31 : Chemical Bonds

Total Number of Bonds: 110
Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C58 C55 C C sing 1.53 N N
2 C56 C55 C C sing 1.53 N N
3 C55 C57 C C sing 1.53 N N
4 C55 C27 C C sing 1.53 N N
5 C27 N28 C N sing 1.48 N N
6 C27 C25 C C sing 1.51 N N
7 N28 C29 N C sing 1.36 N N
8 F15 C14 F C sing 1.4 N N
9 C23 N24 C N sing 1.46 N N
10 C23 C22 C C sing 1.54 N N
11 C29 O30 C O doub 1.21 N N
12 C29 O31 C O sing 1.34 N N
13 C14 F16 C F sing 1.4 N N
14 C14 C13 C C sing 1.53 N N
15 C25 N24 C N sing 1.35 N N
16 C25 O26 C O doub 1.21 N N
17 O19 C18 O C doub 1.21 N N
18 O07 S05 O S doub 1.42 N N
19 C01 C02 C C sing 1.53 N N
20 O31 C32 O C sing 1.45 N N
21 N24 C20 N C sing 1.46 N N
22 C22 C21 C C sing 1.54 N N
23 C22 O52 C O sing 1.42 N N
24 C32 C33 C C sing 1.53 N N
25 C32 C36 C C sing 1.53 N N
26 C13 C11 C C sing 1.53 N N
27 C13 C12 C C sing 1.53 N N
28 C33 C34 C C sing 1.53 N N
29 C18 C20 C C sing 1.51 N N
30 C18 N17 C N sing 1.35 N N
31 C02 S05 C S sing 1.81 N N
32 C02 C03 C C sing 1.53 N N
33 C02 C04 C C sing 1.53 N N
34 C21 C20 C C sing 1.54 N N
35 S05 N08 S N sing 1.66 N N
36 S05 O06 S O doub 1.42 N N
37 O10 C09 O C doub 1.21 N N
38 C03 C04 C C sing 1.53 N N
39 C09 N08 C N sing 1.35 N N
40 C09 C11 C C sing 1.51 N N
41 O52 C51 O C sing 1.35 N N
42 C11 N17 C N sing 1.47 N N
43 C11 C12 C C sing 1.53 N N
44 C36 O37 C O sing 1.43 N N
45 C36 C35 C C sing 1.53 N N
46 C38 O37 C O sing 1.43 N N
47 C38 C39 C C sing 1.5 N N
48 C34 C35 C C sing 1.53 N N
49 N50 C51 N C doub 1.32 N Y
50 N50 C49 N C sing 1.34 N Y
51 C51 C42 C C sing 1.41 N Y
52 C40 C39 C C doub 1.32 E N
53 C40 C41 C C sing 1.5 N N
54 C48 C49 C C doub 1.41 N Y
55 C48 C47 C C sing 1.36 N Y
56 C49 C44 C C sing 1.42 N Y
57 C42 C41 C C sing 1.5 N N
58 C42 N43 C N doub 1.31 N Y
59 F53 C41 F C sing 1.4 N N
60 C41 F54 C F sing 1.4 N N
61 C47 C46 C C doub 1.39 N Y
62 C44 N43 C N sing 1.34 N Y
63 C44 C45 C C doub 1.4 N Y
64 C46 C45 C C sing 1.36 N Y
65 C13 H131 C H sing 1.09 N N
66 C20 H201 C H sing 1.09 N N
67 C21 H212 C H sing 1.09 N N
68 C21 H211 C H sing 1.09 N N
69 C22 H221 C H sing 1.08 N N
70 C01 H012 C H sing 1.09 N N
71 C01 H013 C H sing 1.09 N N
72 C01 H011 C H sing 1.09 N N
73 C03 H031 C H sing 1.09 N N
74 C03 H032 C H sing 1.09 N N
75 C04 H042 C H sing 1.09 N N
76 C04 H041 C H sing 1.09 N N
77 C12 H122 C H sing 1.09 N N
78 C12 H121 C H sing 1.09 N N
79 C14 H141 C H sing 1.09 N N
80 C23 H231 C H sing 1.09 N N
81 C23 H232 C H sing 1.09 N N
82 C27 H271 C H sing 1.09 N N
83 C32 H321 C H sing 1.09 N N
84 C33 H332 C H sing 1.09 N N
85 C33 H331 C H sing 1.09 N N
86 C34 H342 C H sing 1.09 N N
87 C34 H341 C H sing 1.09 N N
88 C35 H352 C H sing 1.09 N N
89 C35 H351 C H sing 1.09 N N
90 C36 H361 C H sing 1.09 N N
91 C38 H382 C H sing 1.09 N N
92 C38 H381 C H sing 1.09 N N
93 C39 H391 C H sing 1.08 N N
94 C40 H401 C H sing 1.07 N N
95 C45 H451 C H sing 1.08 N N
96 C46 H461 C H sing 1.08 N N
97 C47 H471 C H sing 1.08 N N
98 C48 H481 C H sing 1.08 N N
99 C56 H563 C H sing 1.09 N N
100 C56 H562 C H sing 1.09 N N
101 C56 H561 C H sing 1.09 N N
102 C57 H571 C H sing 1.09 N N
103 C57 H573 C H sing 1.09 N N
104 C57 H572 C H sing 1.09 N N
105 C58 H583 C H sing 1.09 N N
106 C58 H582 C H sing 1.09 N N
107 C58 H581 C H sing 1.09 N N
108 N08 H081 N H sing 0.97 N N
109 N17 H171 N H sing 0.97 N N
110 N28 H281 N H sing 0.97 N N



O31 : Used in PDB Entries

Total Number of PDB Entries: 10
Ligand Code PDB Entry ID Type Total Distinct
O31 6p6l Open in New Window Bound ligand 1 1
O31 6p6m Open in New Window Bound ligand 1 1
O31 6p6o Open in New Window Bound ligand 1 1
O31 6p6r Open in New Window Bound ligand 1 1
O31 6p6s Open in New Window Bound ligand 1 1
O31 6p6t Open in New Window Bound ligand 1 1
O31 6p6v Open in New Window Bound ligand 1 1
O31 6p6z Open in New Window Bound ligand 1 1
O31 6vdl Open in New Window Bound ligand 1 1
O31 6vdm Open in New Window Bound ligand 1 1