› 3tcs

X-ray diffraction
1.88Å resolution

Crystal structure of a putative racemase from Roseobacter denitrificans

Released:
DOI: 10.2210/pdb3tcs/pdb
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PDB entry 3tcs coloured by chain, front view.
PDB entry 3tcs coloured by chain, side view.
PDB entry 3tcs coloured by chain, top view.
Source organism: Roseobacter denitrificans OCh 114
Entry authors: Eswaramoorthy S, Chamala S, Evans B, Foti R, Gizzi A, Hillerich B, Kar A, LaFleur J, Seidel R, Villigas G, Zencheck W, Almo SC, Swaminathan S, New York Structural Genomics Research Consortium (NYSGRC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172454 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Mandelate racemase/muconate lactonizing enzyme C-terminal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 388 amino acids
Theoretical weight: 43.84 KDa
Source organism: Roseobacter denitrificans OCh 114
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: Q161M1 (Residues: 1-366; Coverage: 100%)
Gene name: RD1_3860
Sequence domains:
Structure domains:

Ligands and Environments

5 bound ligands:
Ligand CL 2 x CL
Ligand MG 4 x MG
Ligand DAL 2 x DAL
Ligand GOL 2 x GOL
Ligand PG4 2 x PG4
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: NSLS BEAMLINE X29A
Spacegroup: P21212
Unit cell:
a: 182.492Å b: 64.745Å c: 76.449Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.195 0.195 0.216
Expression system: Escherichia coli BL21

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