4v7r

X-ray diffraction
4Å resolution

Yeast 80S ribosome.

Released:
Model geometry
Fit model/data

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assemblies composition:
hetero 73-mer (preferred)
hetero 66-mer
PDBe Complex ID:
PDB-CPX-126826 (preferred)
Entry contents:
69 distinct polypeptide molecules
4 distinct RNA molecules
Macromolecules (73 distinct):
Small ribosomal subunit protein uS2A Chains: AA, CA
Molecule details ›
Chains: AA, CA
Length: 252 amino acids
Theoretical weight: 28.05 KDa
Source organism: Saccharomyces cerevisiae
Small ribosomal subunit protein uS5 Chains: AB, CB
Molecule details ›
Chains: AB, CB
Length: 254 amino acids
Theoretical weight: 27.49 KDa
Source organism: Saccharomyces cerevisiae
Small ribosomal subunit protein uS3 Chains: AC, CC
Small ribosomal subunit protein uS7 Chains: AD, CD
Small ribosomal subunit protein uS4A Chains: AE, CE
40S ribosomal protein S11 Chains: AF, CF
Small ribosomal subunit protein uS15 Chains: AG, CG
Small ribosomal subunit protein uS11A Chains: AH, CH
Small ribosomal subunit protein uS19 Chains: AI, CI
40S ribosomal protein S16 Chains: AJ, CJ
Small ribosomal subunit protein eS17A Chains: AK, CK
40S ribosomal protein S18 Chains: AL, CL
Small ribosomal subunit protein eS19A Chains: AM, CM
Small ribosomal subunit protein uS10 Chains: AN, CN
Small ribosomal subunit protein uS8A Chains: AO, CO
40S ribosomal protein S23 Chains: AP, CP
Small ribosomal subunit protein eS25A Chains: AQ, CQ
Small ribosomal subunit protein eS28A Chains: AR, CR
Small ribosomal subunit protein uS14A Chains: AS, CS
Small ribosomal subunit protein RACK1 Chains: AT, CT
Unassigned secondary structure Chains: Aa, Bo, Ca
Unassigned secondary structure Chains: Ab, Cb
Unassigned secondary structure Chains: Ac, Cc
Unassigned secondary structure Chains: Ad, Cd
Unassigned secondary structure Chains: Ae, Bj, Dj
Unassigned secondary structure Chain: Af
Unassigned secondary structure Chains: Ah, Ch
60S ribosomal protein L1 Chains: BA, DA
60S ribosomal protein L2 Chains: BB, DB
Large ribosomal subunit protein uL3 Chains: BC, DC
Large ribosomal subunit protein uL4A Chains: BD, DD
Large ribosomal subunit protein uL18 Chains: BE, DE
Large ribosomal subunit protein eL6A Chains: BF, DF
Large ribosomal subunit protein uL30A Chains: BG, DG
Large ribosomal subunit protein eL8A Chains: BH, DH
Large ribosomal subunit protein uL6A Chains: BI, DI
Large ribosomal subunit protein uL16 Chains: BJ, DJ
Large ribosomal subunit protein uL5A Chains: BK, DK
Large ribosomal subunit protein eL14A Chains: BN, DN
Large ribosomal subunit protein eL15A Chains: BO, DO
Large ribosomal subunit protein uL13A Chains: BP, DP
Large ribosomal subunit protein uL22A Chains: BQ, DQ
60S ribosomal protein L18 Chains: BR, DR
60S ribosomal protein L19 Chains: BS, DS
Large ribosomal subunit protein eL21A Chains: BT, DT
60S ribosomal protein L23 Chains: BU, DU
Large ribosomal subunit protein eL24A Chains: BV, DV
Large ribosomal subunit protein uL23 Chains: BW, DW
Large ribosomal subunit protein uL24A Chains: BX, DX
Large ribosomal subunit protein uL15 Chains: BY, DY
Large ribosomal subunit protein eL30 Chains: BZ, DZ
Large ribosomal subunit protein eL31A Chains: Ba, Da
Large ribosomal subunit protein eL32 Chains: Bb, Db
60S ribosomal protein L35 Chains: Bc, Dc
Large ribosomal subunit protein eL37A Chains: Bd, Dd
Large ribosomal subunit protein eL39 Chains: Be, De
60S ribosomal protein L42 Chains: Bf, Df
60S ribosomal protein L43 Chains: Bg, Dg
Unassigned secondary structure Chains: Bh, Dh
Unassigned secondary structure Chains: Bi, Di
Unassigned secondary structure Chains: Bk, Dk
Unassigned secondary structure Chain: Bl
Unassigned secondary structure Chain: Bm
Unassigned secondary structure Chain: Bn
Unassigned secondary structure Chain: Bp
Unassigned secondary structure Chain: Bq
Unassigned secondary structure Chain: Br
60S ribosomal protein L12 Chain: DL
Large ribosomal subunit protein uL10 Chain: DM
18S Ribosomal RNA Chains: A1, C1
25S ribosomal RNA Chains: B1, D1
5S ribosomal RNA Chains: B2, D2
5.8S ribosomal RNA Chains: B3, D3

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: SLS BEAMLINE X06SA
Spacegroup: P21
Unit cell:
a: 437.11Å b: 288.38Å c: 306.56Å
α: 90° β: 99.13° γ: 90°
R-values:
R R work R free
0.28 0.278 0.341