4z7n

X-ray diffraction
2.6Å resolution

Integrin alphaIIbbeta3 in complex with AGDV peptide

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero pentamer (preferred)
PDBe Complex ID:
PDB-CPX-529058 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (8 distinct):
Integrin alpha-IIb heavy chain Chains: A, C
Molecule details ›
Chains: A, C
Length: 455 amino acids
Theoretical weight: 49.36 KDa
Source organism: Homo sapiens
Expression system: Cricetulus griseus
UniProt:
  • Canonical: P08514 (Residues: 32-486; Coverage: 45%)
Gene names: GP2B, ITGA2B, ITGAB
Sequence domains: FG-GAP repeat
Structure domains: Integrin alpha, N-terminal
Integrin beta-3 Chains: B, D
Molecule details ›
Chains: B, D
Length: 469 amino acids
Theoretical weight: 51.8 KDa
Source organism: Homo sapiens
Expression system: Cricetulus griseus
UniProt:
  • Canonical: P05106 (Residues: 29-497; Coverage: 62%)
Gene names: GP3A, ITGB3
Sequence domains:
Structure domains:
Monoclonal antibody 10E5 heavy chain Chains: E, H
Molecule details ›
Chains: E, H
Length: 219 amino acids
Theoretical weight: 23.61 KDa
Source organism: Mus musculus
Expression system: Cricetulus griseus
Structure domains: Immunoglobulins
Monoclonal antibody 10E5 light chain Chains: F, L
Molecule details ›
Chains: F, L
Length: 214 amino acids
Theoretical weight: 23.33 KDa
Source organism: Mus musculus
Expression system: Cricetulus griseus
Structure domains: Immunoglobulins
Tetrapeptide ALA-GLY-ASP-VAL Chains: G, J
Molecule details ›
Chains: G, J
Length: 4 amino acids
Theoretical weight: 360 Da
Source organism: Homo sapiens
Expression system: Not provided

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, BMA, MAN
Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG, BMA, MAN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 23-ID-B
Spacegroup: P21212
Unit cell:
a: 256.883Å b: 144.373Å c: 104.639Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.23 0.23 0.253
Expression systems:
  • Cricetulus griseus
  • Not provided