8civ

Electron Microscopy
2.47Å resolution

Translocation intermediate 5 (TI-5) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero 84-mer (preferred)
PDBe Complex ID:
PDB-CPX-271526 (preferred)
Entry contents:
77 distinct polypeptide molecules
7 distinct RNA molecules
Macromolecules (84 distinct):
Small ribosomal subunit protein eS24A Chain: 0
Molecule details ›
Chain: 0
Length: 135 amino acids
Theoretical weight: 15.36 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: P0CX31 (Residues: 1-135; Coverage: 100%)
Gene names: RPS24A, RPS24EA, YER074W
Sequence domains: Ribosomal protein S24e
Small ribosomal subunit protein eS25A Chain: 1
Molecule details ›
Chain: 1
Length: 108 amino acids
Theoretical weight: 12.07 KDa
Source organism: Saccharomyces cerevisiae
UniProt:
  • Canonical: Q3E792 (Residues: 1-108; Coverage: 100%)
Gene names: RPS25A, RPS31A, YGR027C
Sequence domains: S25 ribosomal protein
40S ribosomal protein S26 Chain: 2
Small ribosomal subunit protein eS27A Chain: 3
Small ribosomal subunit protein eS28A Chain: 4
HLJ1_G0030400.mRNA.1.CDS.1 Chain: 5
Small ribosomal subunit protein eS30A Chain: 6
Small ribosomal subunit protein RACK1 Chain: 7
Ubiquitin-40S ribosomal protein S31 Chain: 8
Large ribosomal subunit protein uL13A Chain: A
Elongation factor 2 Chain: Aa
Large ribosomal subunit protein uL22A Chain: B
Large ribosomal subunit protein eL18A Chain: C
Large ribosomal subunit protein eL19A Chain: D
Large ribosomal subunit protein uL10 Chain: DD
Large ribosomal subunit protein eL20A Chain: E
Large ribosomal subunit protein uL2A Chain: EE
Large ribosomal subunit protein uL11A Chain: Ee
Large ribosomal subunit protein eL21A Chain: F
Large ribosomal subunit protein uL3 Chain: FF
Large ribosomal subunit protein eL22A Chain: G
Large ribosomal subunit protein uL4A Chain: GG
Large ribosomal subunit protein uL14A Chain: H
Large ribosomal subunit protein uL18 Chain: HH
Large ribosomal subunit protein eL24A Chain: I
Large ribosomal subunit protein eL6A Chain: II
Large ribosomal subunit protein uL23 Chain: J
Large ribosomal subunit protein uL30A Chain: JJ
Large ribosomal subunit protein uL24A Chain: K
Large ribosomal subunit protein eL8A Chain: KK
Large ribosomal subunit protein eL27A Chain: L
RPL9A isoform 1 Chain: LL
Large ribosomal subunit protein uL15 Chain: M
Large ribosomal subunit protein uL16 Chain: MM
Large ribosomal subunit protein eL29 Chain: N
Large ribosomal subunit protein uL5A Chain: NN
Large ribosomal subunit protein eL30 Chain: O
Large ribosomal subunit protein eL13A Chain: OO
Large ribosomal subunit protein eL31A Chain: P
Large ribosomal subunit protein eL14A Chain: PP
Polypeptide Chain: Pp
Large ribosomal subunit protein eL32 Chain: Q
Large ribosomal subunit protein eL15A Chain: QQ
Large ribosomal subunit protein eL33A Chain: R
Large ribosomal subunit protein eL34A Chain: S
Large ribosomal subunit protein uL29A Chain: T
Large ribosomal subunit protein eL36A Chain: U
Large ribosomal subunit protein eL37A Chain: V
Large ribosomal subunit protein eL38 Chain: W
Large ribosomal subunit protein eL39 Chain: X
Ubiquitin-ribosomal protein eL40A fusion protein Chain: Y
60S ribosomal protein L41 Chain: Z
Large ribosomal subunit protein eL42A Chain: a
Large ribosomal subunit protein eL43A Chain: b
Small ribosomal subunit protein uS2A Chain: d
Small ribosomal subunit protein eS1A Chain: e
Small ribosomal subunit protein uS5 Chain: f
RPS3 isoform 1 Chain: g
Small ribosomal subunit protein eS4A Chain: h
Small ribosomal subunit protein uS7 Chain: i
Small ribosomal subunit protein eS6A Chain: j
Small ribosomal subunit protein eS7A Chain: k
Small ribosomal subunit protein eS8B Chain: l
Small ribosomal subunit protein uS4A Chain: m
Small ribosomal subunit protein eS10A Chain: n
Small ribosomal subunit protein uS17A Chain: o
Small ribosomal subunit protein uS15 Chain: p
Small ribosomal subunit protein uS11A Chain: q
Small ribosomal subunit protein uS19 Chain: r
Small ribosomal subunit protein uS9A Chain: s
Small ribosomal subunit protein eS17A Chain: t
Small ribosomal subunit protein uS13A Chain: u
Small ribosomal subunit protein eS19A Chain: v
40S ribosomal protein S20 Chain: w
Small ribosomal subunit protein eS21A Chain: x
Small ribosomal subunit protein uS8A Chain: y
Small ribosomal subunit protein uS12A Chain: z
25S ribosomal RNA Chain: AA
5S ribosomal RNA Chain: BB
Transfer RNA Phe Chain: Bb
5.8S ribosomal RNA Chain: CC
Transfer RNA fMet Chain: Cc
Messenger RNA Chain: Dd
18S Ribosomal RNA Chain: c

Ligands and Environments

Experiments and Validation Details

Entry percentile scores
Resolution: 2.47Å
Relevant EMDB volumes: EMD-16684