data_1QZB
#
_entry.id 1QZB
#
_citation.id primary
_citation.title 'Incorporation of Aminoacyl-tRNA into the Ribosome as seen by Cryo-electron Microscopy'
_citation.journal_abbrev 'Nat. Struct. Biol.'
_citation.journal_volume 10
_citation.page_first 899
_citation.page_last 906
_citation.year 2003
_citation.journal_id_ASTM NSBIEW
_citation.country US
_citation.journal_id_ISSN 1072-8368
_citation.journal_id_CSD 2024
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 14566331
_citation.pdbx_database_id_DOI 10.1038/nsb1003
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Valle, M.' 1 ?
primary 'Zavialov, A.' 2 ?
primary 'Li, W.' 3 ?
primary 'Stagg, S.M.' 4 ?
primary 'Sengupta, J.' 5 ?
primary 'Nielsen, R.C.' 6 ?
primary 'Nissen, P.' 7 ?
primary 'Harvey, S.C.' 8 ?
primary 'Ehrenberg, M.' 9 ?
primary 'Frank, J.' 10 ?
#
_entity.id 1
_entity.type polymer
_entity.src_method syn
_entity.pdbx_description Phe-tRNA
_entity.formula_weight 24518.570
_entity.pdbx_number_of_molecules 1
_entity.pdbx_ec ?
_entity.pdbx_mutation ?
_entity.pdbx_fragment ?
_entity.details ?
#
_entity_poly.entity_id 1
_entity_poly.type polyribonucleotide
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
_entity_poly.pdbx_seq_one_letter_code_can GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA
_entity_poly.pdbx_strand_id B
_entity_poly.pdbx_target_identifier ?
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 G n
1 2 C n
1 3 G n
1 4 G n
1 5 A n
1 6 U n
1 7 U n
1 8 U n
1 9 A n
1 10 G n
1 11 C n
1 12 U n
1 13 C n
1 14 A n
1 15 G n
1 16 U n
1 17 U n
1 18 G n
1 19 G n
1 20 G n
1 21 A n
1 22 G n
1 23 A n
1 24 G n
1 25 C n
1 26 G n
1 27 C n
1 28 C n
1 29 A n
1 30 G n
1 31 A n
1 32 C n
1 33 U n
1 34 G n
1 35 A n
1 36 A n
1 37 G n
1 38 A n
1 39 U n
1 40 C n
1 41 U n
1 42 G n
1 43 G n
1 44 A n
1 45 G n
1 46 G n
1 47 U n
1 48 C n
1 49 C n
1 50 U n
1 51 G n
1 52 U n
1 53 G n
1 54 U n
1 55 U n
1 56 C n
1 57 G n
1 58 A n
1 59 U n
1 60 C n
1 61 C n
1 62 A n
1 63 C n
1 64 A n
1 65 G n
1 66 A n
1 67 A n
1 68 U n
1 69 U n
1 70 C n
1 71 G n
1 72 C n
1 73 A n
1 74 C n
1 75 C n
1 76 A n
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221
C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197
G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221
U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 G 1 1 ? ? ? B . n
A 1 2 C 2 2 2 C C B . n
A 1 3 G 3 3 3 G G B . n
A 1 4 G 4 4 4 G G B . n
A 1 5 A 5 5 5 A A B . n
A 1 6 U 6 6 6 U U B . n
A 1 7 U 7 7 7 U U B . n
A 1 8 U 8 8 8 U U B . n
A 1 9 A 9 9 9 A A B . n
A 1 10 G 10 10 10 G G B . n
A 1 11 C 11 11 11 C C B . n
A 1 12 U 12 12 12 U U B . n
A 1 13 C 13 13 13 C C B . n
A 1 14 A 14 14 14 A A B . n
A 1 15 G 15 15 15 G G B . n
A 1 16 U 16 16 16 U U B . n
A 1 17 U 17 17 17 U U B . n
A 1 18 G 18 18 18 G G B . n
A 1 19 G 19 19 19 G G B . n
A 1 20 G 20 20 20 G G B . n
A 1 21 A 21 21 21 A A B . n
A 1 22 G 22 22 22 G G B . n
A 1 23 A 23 23 23 A A B . n
A 1 24 G 24 24 24 G G B . n
A 1 25 C 25 25 25 C C B . n
A 1 26 G 26 26 26 G G B . n
A 1 27 C 27 27 27 C C B . n
A 1 28 C 28 28 28 C C B . n
A 1 29 A 29 29 29 A A B . n
A 1 30 G 30 30 30 G G B . n
A 1 31 A 31 31 31 A A B . n
A 1 32 C 32 32 32 C C B . n
A 1 33 U 33 33 33 U U B . n
A 1 34 G 34 34 34 G G B . n
A 1 35 A 35 35 35 A A B . n
A 1 36 A 36 36 36 A A B . n
A 1 37 G 37 37 37 G G B . n
A 1 38 A 38 38 38 A A B . n
A 1 39 U 39 39 39 U U B . n
A 1 40 C 40 40 40 C C B . n
A 1 41 U 41 41 41 U U B . n
A 1 42 G 42 42 42 G G B . n
A 1 43 G 43 43 43 G G B . n
A 1 44 A 44 44 44 A A B . n
A 1 45 G 45 45 45 G G B . n
A 1 46 G 46 46 46 G G B . n
A 1 47 U 47 47 47 U U B . n
A 1 48 C 48 48 48 C C B . n
A 1 49 C 49 49 49 C C B . n
A 1 50 U 50 50 50 U U B . n
A 1 51 G 51 51 51 G G B . n
A 1 52 U 52 52 52 U U B . n
A 1 53 G 53 53 53 G G B . n
A 1 54 U 54 54 54 U U B . n
A 1 55 U 55 55 55 U U B . n
A 1 56 C 56 56 56 C C B . n
A 1 57 G 57 57 57 G G B . n
A 1 58 A 58 58 58 A A B . n
A 1 59 U 59 59 59 U U B . n
A 1 60 C 60 60 60 C C B . n
A 1 61 C 61 61 61 C C B . n
A 1 62 A 62 62 62 A A B . n
A 1 63 C 63 63 63 C C B . n
A 1 64 A 64 64 64 A A B . n
A 1 65 G 65 65 65 G G B . n
A 1 66 A 66 66 66 A A B . n
A 1 67 A 67 67 67 A A B . n
A 1 68 U 68 68 68 U U B . n
A 1 69 U 69 69 69 U U B . n
A 1 70 C 70 70 70 C C B . n
A 1 71 G 71 71 71 G G B . n
A 1 72 C 72 72 72 C C B . n
A 1 73 A 73 73 73 A A B . n
A 1 74 C 74 74 74 C C B . n
A 1 75 C 75 75 75 C C B . n
A 1 76 A 76 76 76 A A B . n
#
_cell.entry_id 1QZB
_cell.length_a 1
_cell.length_b 1
_cell.length_c 1
_cell.angle_alpha 90
_cell.angle_beta 90
_cell.angle_gamma 90
_cell.pdbx_unique_axis ?
_cell.Z_PDB 1
_cell.length_a_esd ?
_cell.length_b_esd ?
_cell.length_c_esd ?
_cell.angle_alpha_esd ?
_cell.angle_beta_esd ?
_cell.angle_gamma_esd ?
#
_symmetry.entry_id 1QZB
_symmetry.space_group_name_H-M 'P 1'
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.Int_Tables_number 1
_symmetry.cell_setting ?
#
_exptl.entry_id 1QZB
_exptl.method 'Electron Microscopy'
_exptl.crystals_number ?
#
_refine_hist.pdbx_refine_id 'Electron Microscopy'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 0
_refine_hist.pdbx_number_atoms_nucleic_acid 75
_refine_hist.pdbx_number_atoms_ligand 0
_refine_hist.number_atoms_solvent 0
_refine_hist.number_atoms_total 75
_refine_hist.d_res_high .
_refine_hist.d_res_low .
#
_struct.entry_id 1QZB
_struct.title
'Coordinates of the A-site tRNA model fitted into the cryo-EM map of 70S ribosome in the pre-translocational state'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 1QZB
_struct_keywords.pdbx_keywords RNA
_struct_keywords.text 'A-site tRNA, RNA'
#
_struct_asym.id A
_struct_asym.pdbx_blank_PDB_chainid_flag N
_struct_asym.pdbx_modified N
_struct_asym.entity_id 1
_struct_asym.details ?
#
_struct_ref.id 1
_struct_ref.entity_id 1
_struct_ref.db_name PDB
_struct_ref.db_code 1QZB
_struct_ref.pdbx_db_accession 1QZB
_struct_ref.pdbx_db_isoform ?
_struct_ref.pdbx_seq_one_letter_code ?
_struct_ref.pdbx_align_begin ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 1QZB
_struct_ref_seq.pdbx_strand_id B
_struct_ref_seq.seq_align_beg 1
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 76
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession 1QZB
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 76
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 76
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_defined_assembly
_pdbx_struct_assembly.method_details ?
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.pdbx_parent_biol_id ?
_struct_biol.details ?
#
_em_3d_fitting.id 1
_em_3d_fitting.entry_id 1QZB
_em_3d_fitting.ref_protocol OTHER
_em_3d_fitting.ref_space REAL
_em_3d_fitting.overall_b_value ?
_em_3d_fitting.target_criteria ?
_em_3d_fitting.details 'METHOD--Manual fitting in O'
_em_3d_fitting.method ?
#
_em_3d_fitting_list.3d_fitting_id 1
_em_3d_fitting_list.id 1
_em_3d_fitting_list.pdb_entry_id 1OB2
_em_3d_fitting_list.pdb_chain_id ?
_em_3d_fitting_list.details ?
_em_3d_fitting_list.initial_refinement_model_id 1
_em_3d_fitting_list.chain_id ?
_em_3d_fitting_list.chain_residue_range ?
_em_3d_fitting_list.pdb_chain_residue_range ?
_em_3d_fitting_list.source_name PDB
_em_3d_fitting_list.type 'experimental model'
_em_3d_fitting_list.accession_code 1OB2
#
_em_3d_reconstruction.entry_id 1QZB
_em_3d_reconstruction.id 1
_em_3d_reconstruction.symmetry_type POINT
_em_3d_reconstruction.num_particles 52181
_em_3d_reconstruction.image_processing_id 1
_em_3d_reconstruction.method '3D projection matching; conjugate gradient with regularization'
_em_3d_reconstruction.nominal_pixel_size ?
_em_3d_reconstruction.actual_pixel_size 2.82
_em_3d_reconstruction.resolution 9
_em_3d_reconstruction.magnification_calibration TMV
_em_3d_reconstruction.details 'SPIDER package'
_em_3d_reconstruction.resolution_method ?
_em_3d_reconstruction.num_class_averages ?
_em_3d_reconstruction.algorithm ?
#
_em_buffer.id 1
_em_buffer.specimen_id 1
_em_buffer.name 'Polymix buffer'
_em_buffer.pH 7.5
_em_buffer.details 'Polymix buffer'
#
loop_
_em_entity_assembly.id
_em_entity_assembly.name
_em_entity_assembly.type
_em_entity_assembly.parent_id
_em_entity_assembly.synonym
_em_entity_assembly.details
_em_entity_assembly.oligomeric_details
1 '70S ribosome' RIBOSOME 0 ?
;70S bearing deacylated tRNAfMet in the P site and dipeptidyl MP-tRNA in the A site. Same complex as in project 
138 but in the absence of Kirromicin. The Phe-tRNA is fully delivered to the A-site and after the peptide bond formation the dipeptidyl-tRNA stays in 
the A site. mRNA codes for MP-stop
;
?
2 tRNA ? 1 ? ? ?
#
_em_imaging.entry_id 1QZB
_em_imaging.id 1
_em_imaging.specimen_id 1
_em_imaging.date ?
_em_imaging.temperature 93
_em_imaging.microscope_model 'FEI TECNAI F20'
_em_imaging.nominal_defocus_min 2000
_em_imaging.nominal_defocus_max 4000
_em_imaging.tilt_angle_min 0
_em_imaging.tilt_angle_max 0
_em_imaging.nominal_cs 2.0
_em_imaging.mode 'BRIGHT FIELD'
_em_imaging.illumination_mode 'FLOOD BEAM'
_em_imaging.nominal_magnification 50000
_em_imaging.calibrated_magnification 49696
_em_imaging.electron_source 'FIELD EMISSION GUN'
_em_imaging.accelerating_voltage 200
_em_imaging.details ?
_em_imaging.specimen_holder_type ?
_em_imaging.specimen_holder_model ?
_em_imaging.citation_id ?
_em_imaging.detector_distance ?
_em_imaging.recording_temperature_maximum ?
_em_imaging.recording_temperature_minimum ?
_em_imaging.astigmatism ?
_em_imaging.electron_beam_tilt_params ?
#
_em_sample_support.id 1
_em_sample_support.specimen_id 1
_em_sample_support.details 'Quantifoil holley carbon film grids'
_em_sample_support.film_material ?
_em_sample_support.grid_material ?
_em_sample_support.grid_mesh_size ?
_em_sample_support.grid_type ?
_em_sample_support.method ?
#
_em_vitrification.entry_id 1QZB
_em_vitrification.id 1
_em_vitrification.cryogen_name ETHANE
_em_vitrification.details 'Rapid-freezing in liquid ethane'
_em_vitrification.citation_id ?
_em_vitrification.humidity ?
_em_vitrification.instrument ?
_em_vitrification.method ?
_em_vitrification.specimen_id 1
_em_vitrification.temp ?
_em_vitrification.time_resolved_state ?
#
_em_experiment.entry_id 1QZB
_em_experiment.id 1
_em_experiment.aggregation_state PARTICLE
_em_experiment.entity_assembly_id 1
_em_experiment.reconstruction_method 'SINGLE PARTICLE'
#
_em_single_particle_entity.entry_id 1QZB
_em_single_particle_entity.id 1
_em_single_particle_entity.point_symmetry C1
_em_single_particle_entity.image_processing_id 1
#
_pdbx_unobs_or_zero_occ_residues.id 1
_pdbx_unobs_or_zero_occ_residues.PDB_model_num 1
_pdbx_unobs_or_zero_occ_residues.polymer_flag Y
_pdbx_unobs_or_zero_occ_residues.occupancy_flag 1
_pdbx_unobs_or_zero_occ_residues.auth_asym_id B
_pdbx_unobs_or_zero_occ_residues.auth_comp_id G
_pdbx_unobs_or_zero_occ_residues.auth_seq_id 1
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code ?
_pdbx_unobs_or_zero_occ_residues.label_asym_id A
_pdbx_unobs_or_zero_occ_residues.label_comp_id G
_pdbx_unobs_or_zero_occ_residues.label_seq_id 1
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
A OP3 O N N 1
A P P N N 2
A OP1 O N N 3
A OP2 O N N 4
A "O5'" O N N 5
A "C5'" C N N 6
A "C4'" C N R 7
A "O4'" O N N 8
A "C3'" C N S 9
A "O3'" O N N 10
A "C2'" C N R 11
A "O2'" O N N 12
A "C1'" C N R 13
A N9 N Y N 14
A C8 C Y N 15
A N7 N Y N 16
A C5 C Y N 17
A C6 C Y N 18
A N6 N N N 19
A N1 N Y N 20
A C2 C Y N 21
A N3 N Y N 22
A C4 C Y N 23
A HOP3 H N N 24
A HOP2 H N N 25
A "H5'" H N N 26
A "H5''" H N N 27
A "H4'" H N N 28
A "H3'" H N N 29
A "HO3'" H N N 30
A "H2'" H N N 31
A "HO2'" H N N 32
A "H1'" H N N 33
A H8 H N N 34
A H61 H N N 35
A H62 H N N 36
A H2 H N N 37
C OP3 O N N 38
C P P N N 39
C OP1 O N N 40
C OP2 O N N 41
C "O5'" O N N 42
C "C5'" C N N 43
C "C4'" C N R 44
C "O4'" O N N 45
C "C3'" C N S 46
C "O3'" O N N 47
C "C2'" C N R 48
C "O2'" O N N 49
C "C1'" C N R 50
C N1 N N N 51
C C2 C N N 52
C O2 O N N 53
C N3 N N N 54
C C4 C N N 55
C N4 N N N 56
C C5 C N N 57
C C6 C N N 58
C HOP3 H N N 59
C HOP2 H N N 60
C "H5'" H N N 61
C "H5''" H N N 62
C "H4'" H N N 63
C "H3'" H N N 64
C "HO3'" H N N 65
C "H2'" H N N 66
C "HO2'" H N N 67
C "H1'" H N N 68
C H41 H N N 69
C H42 H N N 70
C H5 H N N 71
C H6 H N N 72
G OP3 O N N 73
G P P N N 74
G OP1 O N N 75
G OP2 O N N 76
G "O5'" O N N 77
G "C5'" C N N 78
G "C4'" C N R 79
G "O4'" O N N 80
G "C3'" C N S 81
G "O3'" O N N 82
G "C2'" C N R 83
G "O2'" O N N 84
G "C1'" C N R 85
G N9 N Y N 86
G C8 C Y N 87
G N7 N Y N 88
G C5 C Y N 89
G C6 C N N 90
G O6 O N N 91
G N1 N N N 92
G C2 C N N 93
G N2 N N N 94
G N3 N N N 95
G C4 C Y N 96
G HOP3 H N N 97
G HOP2 H N N 98
G "H5'" H N N 99
G "H5''" H N N 100
G "H4'" H N N 101
G "H3'" H N N 102
G "HO3'" H N N 103
G "H2'" H N N 104
G "HO2'" H N N 105
G "H1'" H N N 106
G H8 H N N 107
G H1 H N N 108
G H21 H N N 109
G H22 H N N 110
U OP3 O N N 111
U P P N N 112
U OP1 O N N 113
U OP2 O N N 114
U "O5'" O N N 115
U "C5'" C N N 116
U "C4'" C N R 117
U "O4'" O N N 118
U "C3'" C N S 119
U "O3'" O N N 120
U "C2'" C N R 121
U "O2'" O N N 122
U "C1'" C N R 123
U N1 N N N 124
U C2 C N N 125
U O2 O N N 126
U N3 N N N 127
U C4 C N N 128
U O4 O N N 129
U C5 C N N 130
U C6 C N N 131
U HOP3 H N N 132
U HOP2 H N N 133
U "H5'" H N N 134
U "H5''" H N N 135
U "H4'" H N N 136
U "H3'" H N N 137
U "HO3'" H N N 138
U "H2'" H N N 139
U "HO2'" H N N 140
U "H1'" H N N 141
U H3 H N N 142
U H5 H N N 143
U H6 H N N 144
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
A OP3 P SING N N 1
A OP3 HOP3 SING N N 2
A P OP1 DOUB N N 3
A P OP2 SING N N 4
A P "O5'" SING N N 5
A OP2 HOP2 SING N N 6
A "O5'" "C5'" SING N N 7
A "C5'" "C4'" SING N N 8
A "C5'" "H5'" SING N N 9
A "C5'" "H5''" SING N N 10
A "C4'" "O4'" SING N N 11
A "C4'" "C3'" SING N N 12
A "C4'" "H4'" SING N N 13
A "O4'" "C1'" SING N N 14
A "C3'" "O3'" SING N N 15
A "C3'" "C2'" SING N N 16
A "C3'" "H3'" SING N N 17
A "O3'" "HO3'" SING N N 18
A "C2'" "O2'" SING N N 19
A "C2'" "C1'" SING N N 20
A "C2'" "H2'" SING N N 21
A "O2'" "HO2'" SING N N 22
A "C1'" N9 SING N N 23
A "C1'" "H1'" SING N N 24
A N9 C8 SING Y N 25
A N9 C4 SING Y N 26
A C8 N7 DOUB Y N 27
A C8 H8 SING N N 28
A N7 C5 SING Y N 29
A C5 C6 SING Y N 30
A C5 C4 DOUB Y N 31
A C6 N6 SING N N 32
A C6 N1 DOUB Y N 33
A N6 H61 SING N N 34
A N6 H62 SING N N 35
A N1 C2 SING Y N 36
A C2 N3 DOUB Y N 37
A C2 H2 SING N N 38
A N3 C4 SING Y N 39
C OP3 P SING N N 1
C OP3 HOP3 SING N N 2
C P OP1 DOUB N N 3
C P OP2 SING N N 4
C P "O5'" SING N N 5
C OP2 HOP2 SING N N 6
C "O5'" "C5'" SING N N 7
C "C5'" "C4'" SING N N 8
C "C5'" "H5'" SING N N 9
C "C5'" "H5''" SING N N 10
C "C4'" "O4'" SING N N 11
C "C4'" "C3'" SING N N 12
C "C4'" "H4'" SING N N 13
C "O4'" "C1'" SING N N 14
C "C3'" "O3'" SING N N 15
C "C3'" "C2'" SING N N 16
C "C3'" "H3'" SING N N 17
C "O3'" "HO3'" SING N N 18
C "C2'" "O2'" SING N N 19
C "C2'" "C1'" SING N N 20
C "C2'" "H2'" SING N N 21
C "O2'" "HO2'" SING N N 22
C "C1'" N1 SING N N 23
C "C1'" "H1'" SING N N 24
C N1 C2 SING N N 25
C N1 C6 SING N N 26
C C2 O2 DOUB N N 27
C C2 N3 SING N N 28
C N3 C4 DOUB N N 29
C C4 N4 SING N N 30
C C4 C5 SING N N 31
C N4 H41 SING N N 32
C N4 H42 SING N N 33
C C5 C6 DOUB N N 34
C C5 H5 SING N N 35
C C6 H6 SING N N 36
G OP3 P SING N N 1
G OP3 HOP3 SING N N 2
G P OP1 DOUB N N 3
G P OP2 SING N N 4
G P "O5'" SING N N 5
G OP2 HOP2 SING N N 6
G "O5'" "C5'" SING N N 7
G "C5'" "C4'" SING N N 8
G "C5'" "H5'" SING N N 9
G "C5'" "H5''" SING N N 10
G "C4'" "O4'" SING N N 11
G "C4'" "C3'" SING N N 12
G "C4'" "H4'" SING N N 13
G "O4'" "C1'" SING N N 14
G "C3'" "O3'" SING N N 15
G "C3'" "C2'" SING N N 16
G "C3'" "H3'" SING N N 17
G "O3'" "HO3'" SING N N 18
G "C2'" "O2'" SING N N 19
G "C2'" "C1'" SING N N 20
G "C2'" "H2'" SING N N 21
G "O2'" "HO2'" SING N N 22
G "C1'" N9 SING N N 23
G "C1'" "H1'" SING N N 24
G N9 C8 SING Y N 25
G N9 C4 SING Y N 26
G C8 N7 DOUB Y N 27
G C8 H8 SING N N 28
G N7 C5 SING Y N 29
G C5 C6 SING N N 30
G C5 C4 DOUB Y N 31
G C6 O6 DOUB N N 32
G C6 N1 SING N N 33
G N1 C2 SING N N 34
G N1 H1 SING N N 35
G C2 N2 SING N N 36
G C2 N3 DOUB N N 37
G N2 H21 SING N N 38
G N2 H22 SING N N 39
G N3 C4 SING N N 40
U OP3 P SING N N 1
U OP3 HOP3 SING N N 2
U P OP1 DOUB N N 3
U P OP2 SING N N 4
U P "O5'" SING N N 5
U OP2 HOP2 SING N N 6
U "O5'" "C5'" SING N N 7
U "C5'" "C4'" SING N N 8
U "C5'" "H5'" SING N N 9
U "C5'" "H5''" SING N N 10
U "C4'" "O4'" SING N N 11
U "C4'" "C3'" SING N N 12
U "C4'" "H4'" SING N N 13
U "O4'" "C1'" SING N N 14
U "C3'" "O3'" SING N N 15
U "C3'" "C2'" SING N N 16
U "C3'" "H3'" SING N N 17
U "O3'" "HO3'" SING N N 18
U "C2'" "O2'" SING N N 19
U "C2'" "C1'" SING N N 20
U "C2'" "H2'" SING N N 21
U "O2'" "HO2'" SING N N 22
U "C1'" N1 SING N N 23
U "C1'" "H1'" SING N N 24
U N1 C2 SING N N 25
U N1 C6 SING N N 26
U C2 O2 DOUB N N 27
U C2 N3 SING N N 28
U N3 C4 SING N N 29
U N3 H3 SING N N 30
U C4 O4 DOUB N N 31
U C4 C5 SING N N 32
U C5 C6 DOUB N N 33
U C5 H5 SING N N 34
U C6 H6 SING N N 35
#
_em_ctf_correction.id 1
_em_ctf_correction.details 'CTF correction of 3D maps by Wiener filteration'
_em_ctf_correction.type .
#
_em_image_processing.id 1
_em_image_processing.image_recording_id 1
_em_image_processing.details ?
#
_em_image_recording.details ?
_em_image_recording.id 1
_em_image_recording.avg_electron_dose_per_image 20
_em_image_recording.film_or_detector_model 'KODAK SO-163 FILM'
_em_image_recording.imaging_id 1
_em_image_recording.detector_mode ?
_em_image_recording.average_exposure_time ?
_em_image_recording.num_diffraction_images ?
_em_image_recording.num_grids_imaged ?
_em_image_recording.num_real_images ?
#
_em_specimen.experiment_id 1
_em_specimen.id 1
_em_specimen.concentration 32
_em_specimen.vitrification_applied YES
_em_specimen.staining_applied NO
_em_specimen.embedding_applied NO
_em_specimen.shadowing_applied NO
_em_specimen.details ?
#
_pdbx_coordinate_model.asym_id A
_pdbx_coordinate_model.type 'P ATOMS ONLY'
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 1OB2
#
_atom_sites.entry_id 1QZB
_atom_sites.fract_transf_matrix[1][1] 1.000000
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 1.000000
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 1.000000
_atom_sites.fract_transf_vector[1] 0.00000
_atom_sites.fract_transf_vector[2] 0.00000
_atom_sites.fract_transf_vector[3] 0.00000
#
_atom_type.symbol P
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_alt_id
_atom_site.label_comp_id
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.label_seq_id
_atom_site.pdbx_PDB_ins_code
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_seq_id
_atom_site.auth_comp_id
_atom_site.auth_asym_id
_atom_site.auth_atom_id
_atom_site.pdbx_PDB_model_num
_atom_site.pdbx_label_index
ATOM 1 P P . C A 1 2 ? -5.758 0.226 -37.611 1.00 36.15 ? 2 C B P 1 2
ATOM 2 P P . G A 1 3 ? -7.548 -4.817 -35.780 1.00 38.57 ? 3 G B P 1 3
ATOM 3 P P . G A 1 4 ? -11.932 -7.551 -32.336 1.00 50.13 ? 4 G B P 1 4
ATOM 4 P P . A A 1 5 ? -16.795 -7.912 -28.958 1.00 46.12 ? 5 A B P 1 5
ATOM 5 P P . U A 1 6 ? -21.805 -6.611 -26.755 1.00 41.93 ? 6 U B P 1 6
ATOM 6 P P . U A 1 7 ? -26.975 -3.593 -26.744 1.00 39.61 ? 7 U B P 1 7
ATOM 7 P P . U A 1 8 ? -31.089 2.030 -27.580 1.00 38.44 ? 8 U B P 1 8
ATOM 8 P P . A A 1 9 ? -35.423 2.775 -28.335 1.00 30.30 ? 9 A B P 1 9
ATOM 9 P P . G A 1 10 ? -39.050 8.345 -28.654 1.00 36.63 ? 10 G B P 1 10
ATOM 10 P P . C A 1 11 ? -34.755 8.904 -24.262 1.00 48.28 ? 11 C B P 1 11
ATOM 11 P P . U A 1 12 ? -32.369 6.465 -19.720 1.00 38.23 ? 12 U B P 1 12
ATOM 12 P P . C A 1 13 ? -31.272 1.173 -17.685 1.00 37.44 ? 13 C B P 1 13
ATOM 13 P P . A A 1 14 ? -31.981 -5.471 -20.177 1.00 33.32 ? 14 A B P 1 14
ATOM 14 P P . G A 1 15 ? -33.645 -10.686 -23.328 1.00 33.55 ? 15 G B P 1 15
ATOM 15 P P . U A 1 16 ? -34.340 -13.695 -27.700 1.00 58.67 ? 16 U B P 1 16
ATOM 16 P P . U A 1 17 ? -33.883 -16.686 -32.752 1.00 63.01 ? 17 U B P 1 17
ATOM 17 P P . G A 1 18 ? -31.259 -15.909 -38.418 1.00 51.43 ? 18 G B P 1 18
ATOM 18 P P . G A 1 19 ? -37.225 -13.180 -38.500 1.00 56.66 ? 19 G B P 1 19
ATOM 19 P P . G A 1 20 ? -43.864 -11.829 -38.957 1.00 82.09 ? 20 G B P 1 20
ATOM 20 P P . A A 1 21 ? -43.635 -6.120 -36.923 1.00 46.40 ? 21 A B P 1 21
ATOM 21 P P . G A 1 22 ? -46.276 -4.974 -30.765 1.00 19.04 ? 22 G B P 1 22
ATOM 22 P P . A A 1 23 ? -47.138 -2.794 -24.117 1.00 28.32 ? 23 A B P 1 23
ATOM 23 P P . G A 1 24 ? -48.093 -1.758 -18.840 1.00 33.68 ? 24 G B P 1 24
ATOM 24 P P . C A 1 25 ? -47.497 2.456 -15.297 1.00 50.66 ? 25 C B P 1 25
ATOM 25 P P . G A 1 26 ? -46.529 8.123 -14.354 1.00 60.43 ? 26 G B P 1 26
ATOM 26 P P . C A 1 27 ? -46.631 13.381 -17.559 1.00 88.39 ? 27 C B P 1 27
ATOM 27 P P . C A 1 28 ? -50.041 15.583 -21.816 1.00 108.26 ? 28 C B P 1 28
ATOM 28 P P . A A 1 29 ? -55.442 16.471 -23.178 1.00 132.50 ? 29 A B P 1 29
ATOM 29 P P . G A 1 30 ? -61.462 15.138 -21.832 1.00 164.78 ? 30 G B P 1 30
ATOM 30 P P . A A 1 31 ? -66.694 12.686 -19.173 1.00 172.07 ? 31 A B P 1 31
ATOM 31 P P . C A 1 32 ? -67.465 12.084 -14.147 1.00 176.80 ? 32 C B P 1 32
ATOM 32 P P . U A 1 33 ? -68.159 13.437 -8.953 1.00 200.00 ? 33 U B P 1 33
ATOM 33 P P . G A 1 34 ? -67.519 18.178 -6.035 1.00 193.77 ? 34 G B P 1 34
ATOM 34 P P . A A 1 35 ? -64.029 19.550 -9.947 1.00 185.75 ? 35 A B P 1 35
ATOM 35 P P . A A 1 36 ? -57.782 18.089 -10.796 1.00 196.33 ? 36 A B P 1 36
ATOM 36 P P . G A 1 37 ? -52.701 16.655 -10.766 1.00 200.00 ? 37 G B P 1 37
ATOM 37 P P . A A 1 38 ? -50.476 11.124 -9.444 1.00 193.90 ? 38 A B P 1 38
ATOM 38 P P . U A 1 39 ? -50.948 5.622 -8.416 1.00 171.33 ? 39 U B P 1 39
ATOM 39 P P . C A 1 40 ? -54.795 1.745 -11.425 1.00 160.10 ? 40 C B P 1 40
ATOM 40 P P . U A 1 41 ? -58.057 -0.588 -15.208 1.00 138.03 ? 41 U B P 1 41
ATOM 41 P P . G A 1 42 ? -59.186 -0.594 -20.774 1.00 119.52 ? 42 G B P 1 42
ATOM 42 P P . G A 1 43 ? -57.754 1.195 -26.794 1.00 93.55 ? 43 G B P 1 43
ATOM 43 P P . A A 1 44 ? -53.639 3.584 -31.333 1.00 91.74 ? 44 A B P 1 44
ATOM 44 P P . G A 1 45 ? -49.295 5.893 -33.760 1.00 78.71 ? 45 G B P 1 45
ATOM 45 P P . G A 1 46 ? -43.788 6.888 -33.961 1.00 60.98 ? 46 G B P 1 46
ATOM 46 P P . U A 1 47 ? -37.838 6.244 -35.147 1.00 78.20 ? 47 U B P 1 47
ATOM 47 P P . C A 1 48 ? -35.552 0.173 -37.919 1.00 52.65 ? 48 C B P 1 48
ATOM 48 P P . C A 1 49 ? -30.710 -0.642 -33.151 1.00 17.11 ? 49 C B P 1 49
ATOM 49 P P . U A 1 50 ? -31.003 2.711 -37.547 1.00 17.58 ? 50 U B P 1 50
ATOM 50 P P . G A 1 51 ? -30.216 3.602 -43.159 1.00 21.85 ? 51 G B P 1 51
ATOM 51 P P . U A 1 52 ? -28.755 2.168 -48.651 1.00 7.73 ? 52 U B P 1 52
ATOM 52 P P . G A 1 53 ? -27.240 -2.779 -52.407 1.00 11.78 ? 53 G B P 1 53
ATOM 53 P P . U A 1 54 ? -26.502 -8.282 -54.350 1.00 17.41 ? 54 U B P 1 54
ATOM 54 P P . U A 1 55 ? -28.779 -13.145 -54.296 1.00 30.57 ? 55 U B P 1 55
ATOM 55 P P . C A 1 56 ? -33.926 -14.897 -54.061 1.00 40.60 ? 56 C B P 1 56
ATOM 56 P P . G A 1 57 ? -35.724 -10.053 -52.490 1.00 37.48 ? 57 G B P 1 57
ATOM 57 P P . A A 1 58 ? -35.429 -6.974 -47.533 1.00 32.55 ? 58 A B P 1 58
ATOM 58 P P . U A 1 59 ? -34.995 -4.688 -41.776 1.00 48.23 ? 59 U B P 1 59
ATOM 59 P P . C A 1 60 ? -30.358 -6.402 -39.602 1.00 26.95 ? 60 C B P 1 60
ATOM 60 P P . C A 1 61 ? -25.991 -10.032 -36.513 1.00 28.80 ? 61 C B P 1 61
ATOM 61 P P . A A 1 62 ? -21.743 -11.751 -39.587 1.00 25.23 ? 62 A B P 1 62
ATOM 62 P P . C A 1 63 ? -17.611 -9.879 -42.987 1.00 28.44 ? 63 C B P 1 63
ATOM 63 P P . A A 1 64 ? -14.912 -4.910 -45.463 1.00 30.74 ? 64 A B P 1 64
ATOM 64 P P . G A 1 65 ? -14.792 1.623 -43.525 1.00 13.07 ? 65 G B P 1 65
ATOM 65 P P . A A 1 66 ? -16.376 5.987 -38.708 1.00 22.92 ? 66 A B P 1 66
ATOM 66 P P . A A 1 67 ? -18.028 9.316 -34.410 1.00 22.81 ? 67 A B P 1 67
ATOM 67 P P . U A 1 68 ? -18.743 10.679 -28.875 1.00 45.82 ? 68 U B P 1 68
ATOM 68 P P . U A 1 69 ? -17.308 8.873 -23.402 1.00 51.04 ? 69 U B P 1 69
ATOM 69 P P . C A 1 70 ? -13.801 4.791 -20.033 1.00 50.83 ? 70 C B P 1 70
ATOM 70 P P . G A 1 71 ? -9.372 1.245 -18.842 1.00 54.67 ? 71 G B P 1 71
ATOM 71 P P . C A 1 72 ? -3.810 -1.314 -20.206 1.00 59.46 ? 72 C B P 1 72
ATOM 72 P P . A A 1 73 ? 0.567 -1.911 -22.800 1.00 59.61 ? 73 A B P 1 73
ATOM 73 P P . C A 1 74 ? 4.732 -2.057 -20.714 1.00 59.61 ? 74 C B P 1 74
ATOM 74 P P . C A 1 75 ? 9.331 -7.269 -18.282 1.00 55.58 ? 75 C B P 1 75
ATOM 75 P P . A A 1 76 ? 14.175 -6.671 -16.870 1.00 59.61 ? 76 A B P 1 76
#