› 1sie

X-ray diffraction
3.65Å resolution

MURINE POLYOMAVIRUS COMPLEXED WITH A DISIALYLATED OLIGOSACCHARIDE

Released:
DOI: 10.2210/pdb1sie/pdb
PDB entry 1sie coloured by chain, front view.
PDB entry 1sie coloured by chain, side view.
PDB entry 1sie coloured by chain, top view.
Source organism: Mouse polyomavirus (strain p16 small-plaque)
Primary publication:
Crystal structures of murine polyomavirus in complex with straight-chain and branched-chain sialyloligosaccharide receptor fragments.
Stehle T, Harrison SC
Structure 4 183-94 (1996)
PMID: 8805524

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo 360-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-546254 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Capsid protein VP1 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 383 amino acids
Theoretical weight: 42.41 KDa
Source organism: Mouse polyomavirus (strain p16 small-plaque)
UniProt:
  • Canonical: P49302 (Residues: 2-384; Coverage: 100%)
Sequence domains: Polyomavirus coat protein
Structure domains: Capsid protein VP1,Polyomavirus

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG, GAL, SIA
Carbohydrate polymer
No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Spacegroup: I23
Unit cell:
a: 570Å b: 570Å c: 570Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.244 0.244 0.264

Quick links

Citations

23 review citations

Molecular biology, epidemiology, and pathogenesis of progressive multifocal leukoencephalopathy, the JC virus-induced demyelinating disease of the human brain.
Ferenczy et al. (2012)
22 more

6 mentions without citation

Virus-receptor interactions and receptor-mediated virus entry into host cells.
Casasnovas JM. (2013)
5 more