› 1ac3

Solution NMR

SOLUTION STRUCTURE OF AN RNA-DNA HYBRID DUPLEX CONTAINING A 3'-THIOFORMACETAL LINKER AND AN RNA A-TRACT, NMR, 8 STRUCTURES

Released:
DOI: 10.2210/pdb1ac3/pdb
PDB entry 1ac3 coloured by chain, ensemble of 8 models, front view.
PDB entry 1ac3 coloured by chain, ensemble of 8 models, side view.
PDB entry 1ac3 coloured by chain, ensemble of 8 models, top view.
Source organism: Synthetic construct
Primary publication:
Solution structure of an RNA x DNA hybrid duplex containing a 3'-thioformacetal linker and an RNA A-tract.
Cross CW, Rice JS, Gao X
Biochemistry 36 4096-107 (1997)
PMID: 9100003

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-113408 (preferred)
Entry contents:
1 distinct DNA molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
ANTISENSE HYBRID DUPLEX Chain: A
Molecule details ›
Chain: A
Length: 12 nucleotides
Theoretical weight: 3.6 KDa
Source organism: Synthetic construct
Expression system: Not provided
DNA (5'-D(*(TCP)P*TP*GP*CP*GP*C)-3') Chain: B
Molecule details ›
Chain: B
Length: 12 nucleotides
Theoretical weight: 3.87 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
2 modified residues:
Ligand TSP 1 x TSP
Ligand TCP 1 x TCP

Experiments and Validation Details

Entry percentile scores
Refinement method: SIMULATED ANNEALING, MOLECULAR DYNAMICS SIMULATIONS AND RELAXATION MATRIX REFINEMENT
Expression system: Not provided

Quick links

Citations

2 review citations

Reading DNA differently.
Gat et al. (1998)
1 more