› 1c5e

X-ray diffraction
1.1Å resolution

BACTERIOPHAGE LAMBDA HEAD PROTEIN D

Released:
DOI: 10.2210/pdb1c5e/pdb
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PDB entry 1c5e coloured by chain, front view.
PDB entry 1c5e coloured by chain, side view.
PDB entry 1c5e coloured by chain, top view.
Source organism: Escherichia virus Lambda
Primary publication:
Novel fold and capsid-binding properties of the lambda-phage display platform protein gpD.
Yang F, Forrer P, Dauter Z, Conway JF, Cheng N, Cerritelli ME, Steven AC, Plückthun A, Wlodawer A
Nat Struct Biol 7 230-7 (2000)
PMID: 10700283

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-137223 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Capsid decoration protein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 95 amino acids
Theoretical weight: 9.83 KDa
Source organism: Escherichia virus Lambda
Expression system: Not provided
UniProt:
  • Canonical: P03712 (Residues: 16-110; Coverage: 86%)
Gene names: D, lambdap07
Sequence domains: Bacteriophage lambda head decoration protein D
Structure domains: Head decoration protein D

Ligands and Environments

1 bound ligand:
Ligand GOL 2 x GOL
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: NSLS BEAMLINE X9B
Spacegroup: P21
Unit cell:
a: 45.58Å b: 69.07Å c: 45.59Å
α: 90° β: 104.32° γ: 90°
R-values:
R R work R free
0.098 not available 0.133
Expression system: Not provided

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Citations

13 review citations

Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity.
Steven et al. (2005)
12 more

15 mentions without citation

Keeping It Together: Structures, Functions, and Applications of Viral Decoration Proteins.
Dedeo et al. (2020)
14 more

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