› 1d7e

X-ray diffraction
1.39Å resolution

CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW PROTEIN

Released:
DOI: 10.2210/pdb1d7e/pdb
PDB entry 1d7e coloured by chain, front view.
PDB entry 1d7e coloured by chain, side view.
PDB entry 1d7e coloured by chain, top view.
Source organism: Halorhodospira halophila
Primary publication:
Conformational substates in different crystal forms of the photoactive yellow protein--correlation with theoretical and experimental flexibility.
van Aalten DM, Crielaard W, Hellingwerf KJ, Joshua-Tor L
Protein Sci 9 64-72 (2000)
PMID: 10739248

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-147624 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Photoactive yellow protein Chain: A
Molecule details ›
Chain: A
Length: 122 amino acids
Theoretical weight: 13.49 KDa
Source organism: Halorhodospira halophila
Expression system: Escherichia coli
UniProt:
  • Canonical: P16113 (Residues: 4-125; Coverage: 98%)
Gene name: pyp
Sequence domains: PAS fold
Structure domains: PAS domain

Ligands and Environments

1 bound ligand:
Ligand HC4 1 x HC4
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS BEAMLINE X26C
Spacegroup: P65
Unit cell:
a: 40.561Å b: 40.561Å c: 118.089Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.139 0.139 0.198
Expression system: Escherichia coli

Quick links

Citations

2 review citations

Is allostery an intrinsic property of all dynamic proteins?
Gunasekaran et al. (2004)
1 more

2 mentions without citation

In vitro Inhibition of Pancreatic Lipase by Polyphenols:
A Kinetic, Fluorescence Spectroscopy and Molecular Docking Study.
Martinez-Gonzalez et al. (2017)
1 more