› 1dk9

Solution NMR

SOLUTION STRUCTURE ANALYSIS OF THE DNA DUPLEX D(CATGAGTAC)D(GTACTCATG)

Released:
DOI: 10.2210/pdb1dk9/pdb
PDB entry 1dk9 coloured by chain, front view.
PDB entry 1dk9 coloured by chain, side view.
PDB entry 1dk9 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
NMR structure of a DNA duplex containing nucleoside analog 1-(2'-deoxy-beta-D-ribofuranosyl)-3-nitropyrrole and the structure of the unmodified control.
Klewer DA, Hoskins A, Zhang P, Davisson VJ, Bergstrom DE, LiWang AC
Nucleic Acids Res 28 4514-22 (2000)
PMID: 11071940

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113685 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
5'-D(CP*AP*TP*GP*AP*GP*TP*AP*CP*)-3' Chain: A
Molecule details ›
Chain: A
Length: 9 nucleotides
Theoretical weight: 2.74 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-D(GP*TP*AP*CP*TP*CP*AP*TP*GP*)-3' Chain: B
Molecule details ›
Chain: B
Length: 9 nucleotides
Theoretical weight: 2.73 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this NMR entry.
Expression system: Not provided

Quick links

Citations

2 review citations

Survey and summary: The applications of universal DNA base analogues.
Loakes D. (2001)
1 more

2 mentions without citation

Evolutionarily conserved amino acids that control TCR-MHC interaction.
Marrack et al. (2008)
1 more