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PARTIAL STRUCTURE OF 16S RNA OF THE SMALL RIBOSOMAL SUBUNIT FROM THERMUS THERMOPHILUS

X-ray diffraction
4.5Å resolution
PDB entry 1dv4 coloured by chain, front view.
PDB entry 1dv4 coloured by chain, side view.
PDB entry 1dv4 coloured by chain, top view.
Source organisms:
Assembly composition:
hetero trimer (preferred)
Entry contents: 2 distinct polypeptide molecules
1 distinct RNA molecule

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Assemblies

Assembly 1 (preferred)
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Assembly Name: Small ribosomal protein and RNA
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Multimeric state: hetero trimer
PDBe Complex ID: PDB-CPX-135468

Macromolecules

Small ribosomal subunit protein uS5
Chain: E
Length: 145 amino acids
Theoretical weight: 15.24 KDa
Source organism: Geobacillus stearothermophilus
UniProt:
  • Canonical: P02357 (Residues: 4-148; Coverage: 87%)
Gene name: rpsE
Pfam:
InterPro:
SCOP: Small subunit
Small ribosomal subunit protein uS5 in PDB entry 1dv4, assembly 1, front view.
Small ribosomal subunit protein uS5 in PDB entry 1dv4, assembly 1, side view.
Small ribosomal subunit protein uS5 in PDB entry 1dv4, assembly 1, top view.
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Small ribosomal subunit protein uS7
Chain: G
Length: 135 amino acids
Theoretical weight: 15.34 KDa
Source organism: Thermus thermophilus
UniProt:
  • Canonical: P17291 (Residues: 12-146; Coverage: 87%)
Gene names: TTHA1696, rps7, rpsG
Pfam: Ribosomal protein S7p/S5e
InterPro:
SCOP: Small subunit
Small ribosomal subunit protein uS7 in PDB entry 1dv4, assembly 1, front view.
Small ribosomal subunit protein uS7 in PDB entry 1dv4, assembly 1, side view.
Small ribosomal subunit protein uS7 in PDB entry 1dv4, assembly 1, top view.
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RNA chain A
Name: 16S ribosomal RNA
Representative chains: A
Length: 362 nucleotides
Theoretical weight: 70.94 KDa
16S ribosomal RNA in PDB entry 1dv4, assembly 1, front view.
16S ribosomal RNA in PDB entry 1dv4, assembly 1, side view.
16S ribosomal RNA in PDB entry 1dv4, assembly 1, top view.
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