Function and Biology

THE STRUCTURE OF THE IMMUNOPHILIN-IMMUNOSUPPRESSANT FKBP12-RAPAMYCIN COMPLEX INTERACTING WITH HUMAN FRAP

Source organism: Homo sapiens
Biochemical function: protein-containing complex binding
Biological process: amyloid fibril formation
Cellular component: ryanodine receptor complex

EC 2.7.11.1: Non-specific serine/threonine protein kinase

Reaction catalysed:
ATP + a protein = ADP + a phosphoprotein
Systematic name:
ATP:protein phosphotransferase (non-specific)
Alternative Name(s):
  • A-kinase
  • AP50 kinase
  • ATP-protein transphosphorylase
  • Beta-IIPKC
  • Beta-adrenergic receptor kinase
  • CK-2
  • CKI
  • CKII
  • Calcium-dependent protein kinase C
  • Calcium/phospholipid-dependent protein kinase
  • Casein kinase
  • Casein kinase (phosphorylating)
  • Casein kinase 2
  • Casein kinase I
  • Casein kinase II
  • Cyclic AMP-dependent protein kinase
  • Cyclic AMP-dependent protein kinase A
  • Cyclic monophosphate-dependent protein kinase
  • Cyclic nucleotide-dependent protein kinase
  • Cyclin-dependent kinase
  • Cytidine 3',5'-cyclic monophosphate-responsive protein kinase
  • Dsk1
  • Epsilon PKC
  • Glycogen synthase A kinase
  • Glycogen synthase a kinase
  • Glycogen synthase kinase
  • HIPK2
  • Hpr kinase
  • Hydroxyalkyl-protein kinase
  • M phase-specific cdc2 kinase
  • MAPK
  • Mitogen-activated S6 kinase
  • Mitogen-activated protein kinase
  • P82 kinase
  • PKA
  • PKC
  • Phosphorylase B kinase kinase
  • Phosphorylase b kinase kinase
  • Phosphorylase b kinase kinase
  • Protein glutamyl kinase
  • Protein kinase (phosphorylating)
  • Protein kinase A
  • Protein kinase CK2
  • Protein kinase p58
  • Protein phosphokinase
  • Protein serine kinase
  • Protein serine-threonine kinase
  • Protein-aspartyl kinase
  • Protein-cysteine kinase
  • Protein-serine kinase
  • Prp4 protein kinase
  • Raf kinase
  • Raf-1
  • Ribosomal S6 protein kinase
  • Ribosomal protein S6 kinase II
  • STK32
  • Serine kinase
  • Serine protein kinase
  • Serine(threonine) protein kinase
  • Serine-specific protein kinase
  • Serine/threonine protein kinase
  • T-antigen kinase
  • Threonine-specific protein kinase
  • Twitchin kinase
  • Type-2 casein kinase
  • WEE1Hu
  • Wee 1-like kinase
  • Wee-kinase
  • cAMP-dependent protein kinase
  • cAMP-dependent protein kinase A
  • cGMP-dependent protein kinase

EC 5.2.1.8: Peptidylprolyl isomerase

Reaction catalysed:
Peptidylproline (omega=180) = peptidylproline (omega=0)
Systematic name:
Peptidylproline cis-trans-isomerase
Alternative Name(s):
  • Cyclophilin
  • PPIase
  • Peptide bond isomerase
  • Peptidyl-prolyl cis-trans isomerase
  • Peptidylprolyl cis-trans isomerase
  • Rotamase

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF08771
Domain description: FKBP12-rapamycin binding domain
Occurring in:
  1. Serine/threonine-protein kinase mTOR
The deposited structure of PDB entry 1fap contains 1 copy of Pfam domain PF08771 (FKBP12-rapamycin binding domain ) in Serine/threonine-protein kinase mTOR. Showing 1 copy in chain B.

PF00254
Domain description: FKBP-type peptidyl-prolyl cis-trans isomerase
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase FKBP1A
The deposited structure of PDB entry 1fap contains 1 copy of Pfam domain PF00254 (FKBP-type peptidyl-prolyl cis-trans isomerase) in Peptidyl-prolyl cis-trans isomerase FKBP1A. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR036738
Domain description: FKBP12-rapamycin binding domain superfamily
Occurring in:
  1. Serine/threonine-protein kinase mTOR
IPR001179
Domain description: FKBP-type peptidyl-prolyl cis-trans isomerase domain
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase FKBP1A
IPR009076
Domain description: FKBP12-rapamycin binding domain
Occurring in:
  1. Serine/threonine-protein kinase mTOR
IPR046357
Domain description: Peptidyl-prolyl cis-trans isomerase domain superfamily
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase FKBP1A

Structure domains

CATH CATH domains
1.20.120.150
Class: Mainly Alpha
Architecture: Up-down Bundle
Topology: Four Helix Bundle (Hemerythrin (Met), subunit A)
Homology: FKBP12-rapamycin binding domain
Occurring in:
  1. Serine/threonine-protein kinase mTOR
The deposited structure of PDB entry 1fap contains 1 copy of CATH domain 1.20.120.150 (Four Helix Bundle (Hemerythrin (Met), subunit A)) in Serine/threonine-protein kinase mTOR. Showing 1 copy in chain B.
3.10.50.40
Class: Alpha Beta
Architecture: Roll
Topology: Chitinase A; domain 3
Homology: Chitinase A; domain 3
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase FKBP1A
The deposited structure of PDB entry 1fap contains 1 copy of CATH domain 3.10.50.40 (Chitinase A; domain 3) in Peptidyl-prolyl cis-trans isomerase FKBP1A. Showing 1 copy in chain A.
SCOP SCOP annotations
47213
Class: All alpha proteins
Fold: Four-helical up-and-down bundle
Superfamily: FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)
Occurring in:
  1. Serine/threonine-protein kinase mTOR
The deposited structure of PDB entry 1fap contains 1 copy of SCOP domain 47213 (FKBP12-rapamycin-binding domain of FKBP-rapamycin-associated protein (FRAP)) in Serine/threonine-protein kinase mTOR. Showing 1 copy in chain B.
54535
Class: Alpha and beta proteins (a+b)
Fold: FKBP-like
Superfamily: FKBP-like
Occurring in:
  1. Peptidyl-prolyl cis-trans isomerase FKBP1A
The deposited structure of PDB entry 1fap contains 1 copy of SCOP domain 54535 (FKBP immunophilin/proline isomerase) in Peptidyl-prolyl cis-trans isomerase FKBP1A. Showing 1 copy in chain A.