1gdv › Citations

Structure of cytochrome c6 from the red alga Porphyra yezoensis at 1. 57 A resolution.

Yamada S, Park SY, Shimizu H, Koshizuka Y, Kadokura K, Satoh T, Suruga K, Ogawa M, Isogai Y, Nishio T, Shiro Y, Oku T
Acta Crystallogr D Biol Crystallogr 56 1577-82 (2000)
Cited: 13 times
EuropePMC logo PMID: 11092924

Abstract

The crystal structure of cytochrome c(6) from the red alga Porphyra yezoensis has been determined at 1.57 A resolution. The crystal is tetragonal and belongs to space group P4(3)2(1)2, with unit-cell parameters a = b = 49.26 (3), c = 83.45 (4) A and one molecule per asymmetric unit. The structure was solved by the molecular-replacement method and refined with X-PLOR to an R factor of 19.9% and a free R factor of 25.4%. The overall structure of cytochrome c(6) follows the topology of class I c-type cytochromes in which the heme prosthetic group covalently binds to Cys14 and Cys17, and the iron has an octahedral coordination with His18 and Met58 as the axial ligands. The sequence and the structure of the eukaryotic red algal cytochrome c(6) are very similar to those of a prokaryotic cyanobacterial cytochrome c(6) rather than those of eukaryotic green algal c(6) cytochromes.

Articles - 1gdv mentioned but not cited (1)

  1. Modulation of heme redox potential in the cytochrome c6 family. Worrall JA, Schlarb-Ridley BG, Reda T, Marcaida MJ, Moorlen RJ, Wastl J, Hirst J, Bendall DS, Luisi BF, Howe CJ. J Am Chem Soc 129 9468-9475 (2007)


Reviews citing this publication (1)

  1. New Insights into the Evolution of the Electron Transfer from Cytochrome f to Photosystem I in the Green and Red Branches of Photosynthetic Eukaryotes. Castell C, Rodríguez-Lumbreras LA, Hervás M, Fernández-Recio J, Navarro JA. Plant Cell Physiol 62 1082-1093 (2021)

Articles citing this publication (11)

  1. OmcF, a putative c-Type monoheme outer membrane cytochrome required for the expression of other outer membrane cytochromes in Geobacter sulfurreducens. Kim BC, Leang C, Ding YH, Glaven RH, Coppi MV, Lovley DR. J Bacteriol 187 4505-4513 (2005)
  2. Expression of the algal cytochrome c6 gene in Arabidopsis enhances photosynthesis and growth. Chida H, Nakazawa A, Akazaki H, Hirano T, Suruga K, Ogawa M, Satoh T, Kadokura K, Yamada S, Hakamata W, Isobe K, Ito T, Ishii R, Nishio T, Sonoike K, Oku T. Plant Cell Physiol 48 948-957 (2007)
  3. A comparative structural and functional analysis of cyanobacterial plastocyanin and cytochrome c (6) as alternative electron donors to Photosystem I. Díaz-Quintana A, Navarro JA, Hervás M, Molina-Heredia FP, De la Cerda B, De la Rosa MA. Photosynth Res 75 97-110 (2003)
  4. Outer membrane cytochrome c, OmcF, from Geobacter sulfurreducens: high structural similarity to an algal cytochrome c6. Pokkuluri PR, Londer YY, Wood SJ, Duke NE, Morgado L, Salgueiro CA, Schiffer M. Proteins 74 266-270 (2009)
  5. Plasmon-induced absorption of blind chlorophylls in photosynthetic proteins assembled on silver nanowires. Szalkowski M, Janna Olmos JD, Buczyńska D, Maćkowski S, Kowalska D, Kargul J. Nanoscale 9 10475-10486 (2017)
  6. Crystal structure of oxidized cytochrome c(6A) from Arabidopsis thaliana. Chida H, Yokoyama T, Kawai F, Nakazawa A, Akazaki H, Takayama Y, Hirano T, Suruga K, Satoh T, Yamada S, Kawachi R, Unzai S, Nishio T, Park SY, Oku T. FEBS Lett 580 3763-3768 (2006)
  7. Atomic-resolution structure of reduced cyanobacterial cytochrome c6 with an unusual sequence insertion. Bialek W, Krzywda S, Jaskolski M, Szczepaniak A. FEBS J 276 4426-4436 (2009)
  8. Structural and kinetic studies of imidazole binding to two members of the cytochrome c (6) family reveal an important role for a conserved heme pocket residue. Rajagopal BS, Wilson MT, Bendall DS, Howe CJ, Worrall JA. J Biol Inorg Chem 16 577-588 (2011)
  9. A novel microperoxidase activity: methyl viologen-linked nitrite reducing activity of microperoxidase. Suruga K, Murakami K, Taniyama Y, Hama T, Chida H, Satoh T, Yamada S, Hakamata W, Kawachi R, Isogai Y, Nishio T, Oku T. Biochem Biophys Res Commun 315 815-822 (2004)
  10. Cloning, expression and purification of cytochrome c(6) from the brown alga Hizikia fusiformis and complete X-ray diffraction analysis of the structure. Akazaki H, Kawai F, Chida H, Matsumoto Y, Hirayama M, Hoshikawa K, Unzai S, Hakamata W, Nishio T, Park SY, Oku T. Acta Crystallogr Sect F Struct Biol Cryst Commun 64 674-680 (2008)
  11. Molecular mechanism of direct electron transfer in the robust cytochrome-functionalised graphene nanosystem. Jacquet M, Kiliszek M, Osella S, Izzo M, Sar J, Harputlu E, Unlu CG, Trzaskowski B, Ocakoglu K, Kargul J. RSC Adv 11 18860-18869 (2021)


Quick links