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Structure of C-phycocyanin from Spirulina platensis at 2.2 A resolution: a novel monoclinic crystal form for phycobiliproteins in phycobilisomes.

Wang XQ, Li LN, Chang WR, Zhang JP, Gui LL, Guo BJ, Liang DC
Acta Crystallogr D Biol Crystallogr 57 784-92 (2001)
Cited: 33 times
EuropePMC logo PMID: 11375497

Abstract

The crystal structure of C-phycocyanin from the cyanobacterium S. platensis has been determined at 2.2 A resolution. The crystals belong to the monoclinic crystal form, which has not been previously reported for phycobiliprotein structures. The structure was solved using the molecular-replacement method with a final R value of 18.9% (R(free) = 23.7%) after model building and refinement. In the crystals used for the study, the C-phycocyanin hexamers formed by face-to-face association of two trimers are arranged in layers rather than in columns. Three different kinds of packing between adjacent hexamers in the layer were compared. The tight packing of two adjacent hexamers formed by four trimers in the asymmetric unit brings beta155 PCB chromophores close together, so it is possible that lateral energy transfer takes place through the beta155-beta155 route.

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  1. Phycobiliproteins: Structural aspects, functional characteristics, and biotechnological perspectives. Dagnino-Leone J, Figueroa CP, Castañeda ML, Youlton AD, Vallejos-Almirall A, Agurto-Muñoz A, Pavón Pérez J, Agurto-Muñoz C. Comput Struct Biotechnol J 20 1506-1527 (2022)
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  1. Protein aggregation/folding: the role of deterministic singularities of sequence hydrophobicity as determined by nonlinear signal analysis of acylphosphatase and Abeta(1-40). Zbilut JP, Colosimo A, Conti F, Colafranceschi M, Manetti C, Valerio M, Webber CL, Giuliani A. Biophys J 85 3544-3557 (2003)
  2. Direct single-molecule measurements of phycocyanobilin photophysics in monomeric C-phycocyanin. Squires AH, Moerner WE. Proc Natl Acad Sci U S A 114 9779-9784 (2017)
  3. Identifying protein-protein interface via a novel multi-scale local sequence and structural representation. Guo F, Zou Q, Yang G, Wang D, Tang J, Xu J. BMC Bioinformatics 20 483 (2019)
  4. Anti-Stokes fluorescence excitation reveals conformational mobility of the C-phycocyanin chromophores. Tsoraev GV, Protasova EA, Klimanova EA, Ryzhykau YL, Kuklin AI, Semenov YS, Ge B, Li W, Qin S, Friedrich T, Sluchanko NN, Maksimov EG. Struct Dyn 9 054701 (2022)
  5. Non-conventional octameric structure of C-phycocyanin. Minato T, Teramoto T, Adachi N, Hung NK, Yamada K, Kawasaki M, Akutsu M, Moriya T, Senda T, Ogo S, Kakuta Y, Yoon KS. Commun Biol 4 1238 (2021)
  6. Probing heavy metal binding to phycobiliproteins. Bellamy-Carter J, Sound JK, Leney AC. FEBS J 289 4646-4656 (2022)
  7. X-ray crystallographic studies on C-phycocyanins from cyanobacteria from different habitats: marine and freshwater. Satyanarayana L, Suresh CG, Patel A, Mishra S, Ghosh PK. Acta Crystallogr Sect F Struct Biol Cryst Commun 61 844-847 (2005)
  8. Tuning C-Phycocyanin Photoactivity via pH-Mediated Assembly-Disassembly. Li Y, Gillilan R, Abbaspourrad A. Biomacromolecules 22 5128-5138 (2021)


Reviews citing this publication (4)

  1. Elucidation of the molecular structures of components of the phycobilisome: reconstructing a giant. Adir N. Photosynth Res 85 15-32 (2005)
  2. Phycocyanin: A Potential Drug for Cancer Treatment. Jiang L, Wang Y, Yin Q, Liu G, Liu H, Huang Y, Li B. J Cancer 8 3416-3429 (2017)
  3. Health benefits of microalgae and their microbiomes. Krohn I, Menanteau-Ledouble S, Hageskal G, Astafyeva Y, Jouannais P, Nielsen JL, Pizzol M, Wentzel A, Streit WR. Microb Biotechnol 15 1966-1983 (2022)
  4. Progress of Microencapsulated Phycocyanin in Food and Pharma Industries: A Review. Li Y, Li X, Liang ZP, Chang XY, Li FT, Wang XQ, Lian XJ. Molecules 27 5854 (2022)

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  1. Regulation of the distribution of chlorophyll and phycobilin-absorbed excitation energy in cyanobacteria. A structure-based model for the light state transition. McConnell MD, Koop R, Vasil'ev S, Bruce D. Plant Physiol 130 1201-1212 (2002)
  2. Phycobilin:cystein-84 biliprotein lyase, a near-universal lyase for cysteine-84-binding sites in cyanobacterial phycobiliproteins. Zhao KH, Su P, Tu JM, Wang X, Liu H, Plöscher M, Eichacker L, Yang B, Zhou M, Scheer H. Proc Natl Acad Sci U S A 104 14300-14305 (2007)
  3. The structure of allophycocyanin B from Synechocystis PCC 6803 reveals the structural basis for the extreme redshift of the terminal emitter in phycobilisomes. Peng PP, Dong LL, Sun YF, Zeng XL, Ding WL, Scheer H, Yang X, Zhao KH. Acta Crystallogr D Biol Crystallogr 70 2558-2569 (2014)
  4. Allophycocyanin trimer stability and functionality are primarily due to polar enhanced hydrophobicity of the phycocyanobilin binding pocket. McGregor A, Klartag M, David L, Adir N. J Mol Biol 384 406-421 (2008)
  5. Quantum chemical description of absorption properties and excited-state processes in photosynthetic systems. König C, Neugebauer J. Chemphyschem 13 386-425 (2012)
  6. The 1.45 A three-dimensional structure of C-phycocyanin from the thermophilic cyanobacterium Synechococcus elongatus. Nield J, Rizkallah PJ, Barber J, Chayen NE. J Struct Biol 141 149-155 (2003)
  7. Quantum mechanics/molecular mechanics calculation of the Raman spectra of the phycocyanobilin chromophore in alpha-C-phycocyanin. Mroginski MA, Mark F, Thiel W, Hildebrandt P. Biophys J 93 1885-1894 (2007)
  8. The structure at 2 A resolution of Phycocyanin from Gracilaria chilensis and the energy transfer network in a PC-PC complex. Contreras-Martel C, Matamala A, Bruna C, Poo-Caamaño G, Almonacid D, Figueroa M, Martínez-Oyanedel J, Bunster M. Biophys Chem 125 388-396 (2007)
  9. First case report of anaphylaxis to spirulin: identification of phycocyanin as responsible allergen. Petrus M, Culerrier R, Campistron M, Barre A, Rougé P. Allergy 65 924-925 (2010)
  10. The structural basis of far-red light absorbance by allophycocyanins. Soulier N, Bryant DA. Photosynth Res 147 11-26 (2021)
  11. Toward the origin of exciton electronic structure in phycobiliproteins. Womick JM, Miller SA, Moran AM. J Chem Phys 133 024507 (2010)
  12. Development of a method for phycocyanin recovery from filamentous cyanobacteria and evaluation of its stability and antioxidant capacity. Aoki J, Sasaki D, Asayama M. BMC Biotechnol 21 40 (2021)
  13. General random matrix approach to account for the effect of static disorder on the spectral properties of light harvesting systems. Sener MK, Schulten K. Phys Rev E Stat Nonlin Soft Matter Phys 65 031916 (2002)
  14. Extended-ensemble docking to probe dynamic variation of ligand binding sites during large-scale structural changes of proteins. Kapoor K, Thangapandian S, Tajkhorshid E. Chem Sci 13 4150-4169 (2022)
  15. Chitosan Sponges for Efficient Accumulation and Controlled Release of C-Phycocyanin. Sergeeva YE, Zakharevich AA, Sukhinov DV, Koshkalda AI, Kryukova MV, Malakhov SN, Antipova CG, Klein OI, Gotovtsev PM, Grigoriev TE. BioTech (Basel) 12 55 (2023)
  16. Controlled Release of Phycocyanin in Simulated Gastrointestinal Conditions Using Alginate-Agavins-Polysaccharide Beads. Londoño-Moreno A, Mundo-Franco Z, Franco-Colin M, Buitrago-Arias C, Arenas-Ocampo ML, Jiménez-Aparicio AR, Cano-Europa E, Camacho-Díaz BH. Foods 12 3272 (2023)
  17. Estimation of the relative contributions to the electronic energy transfer rates based on Förster theory: The case of C-phycocyanin chromophores. Mishima K, Shoji M, Umena Y, Boero M, Shigeta Y. Biophys Physicobiol 18 196-214 (2021)


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