› 1giz

Solution NMR

NMR STRUCTURE OF AN OLIGONUCLEOTIDE CONTAINING AN ABASIC SITE: ALPHA ANOMER

Released:
DOI: 10.2210/pdb1giz/pdb
PDB entry 1giz coloured by chain, front view.
PDB entry 1giz coloured by chain, side view.
PDB entry 1giz coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Solution structure of an oligonucleotide containing an abasic site: evidence for an unusual deoxyribose conformation.
Hoehn ST, Turner CJ, Stubbe J
Nucleic Acids Res 29 3413-23 (2001)
PMID: 11504879

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-113867 (preferred)
Entry contents:
2 distinct DNA molecules
Macromolecules (2 distinct):
5'-D(*CP*CP*AP*AP*AP*GP*(D1P)P*AP*CP*TP*GP*GP*G)-3' Chain: A
Molecule details ›
Chain: A
Length: 13 nucleotides
Theoretical weight: 3.89 KDa
Source organism: Synthetic construct
Expression system: Not provided
5'-D(*CP*CP*CP*AP*GP*TP*AP*CP*TP*TP*TP*GP*G)-3' Chain: B
Molecule details ›
Chain: B
Length: 13 nucleotides
Theoretical weight: 3.94 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Refinement method: molecular dynamics
Expression system: Not provided

Quick links

Citations

1 review citation

Recognition of damaged DNA: structure and dynamic markers.
Germann et al. (2012)
17 other articles

1 mention without citation

Solution structure of an oligonucleotide containing an abasic site: evidence for an unusual deoxyribose conformation.
Hoehn et al. (2001)