PDB 1gvi experiment details and validation ‹ Protein Data Bank in Europe (PDBe) ‹ EMBL-EBI

X-ray diffraction

Source organism: Thermus sp.

Resolution: 3.3Å

Reported R values:

R R_free R_work

0.19 0.24 0.19

Entry percentile scores

X-ray diffraction

Sample information

Author description:

Thermus maltogenic amylase in complex with beta-CD

Source organism:

Thermus sp.

Expression system:

Escherichia coli

Validation information

Metric	Description
Bond angles in protein, DNA, RNA molecules	1 outlier(s) of 13540 (%)
Bond lengths in protein, DNA, RNA molecules	0 outlier(s) of 9964 (%)
Ramachandran outliers in protein molecules	50 outlier(s) of 1172 (%)
Sidechain rotamer outliers in protein molecules	101 outlier(s) of 1010 (%)

Experimental information

Dataset statistics

Metric	Value	Source
Cell dimensions	a: 119.09 Å b: 119.09 Å c: 270.2 Å α: 90° β: 90° γ: 120°	Depositor
Spacegroup	P 6₁	Depositor

Refinement statistics

Metric	Value	Source

Quick links

View

Close

Archive mmCIF file
Updated mmCIF file
PDB file
PDB header
Assembly composition XML
FASTA (Entry)
Summary report (PDF)
Full report (PDF)
Percentile plot (PNG)
Percentile plot (SVG)

1gvi @ RCSB
1gvi @ PDBj
1gvi @ PDBSum
1gvi @ Proteopedia

Downloads

Close

Archive mmCIF file
Updated mmCIF file
PDB file
PDB header
PDB file (gz)
PDBML
PDBML (ATOM lines)
PDBML (no atoms)
Assembly composition XML
Assembly 1 (mmCIF; gz)
Assembly 1 (atom only; mmCIF)
FASTA (Entry)
SIFTS XML file with residue-level mappings
Summary report (PDF)
Full report (PDF)
Percentile plot (PNG)
Percentile plot (SVG)
Validation data (XML)

3D Visualisation

Links and resources