› 1kd3

X-ray diffraction
1.8Å resolution

The Crystal Structure of r(GGUCACAGCCC)2, Thallium form

Released:
DOI: 10.2210/pdb1kd3/pdb
PDB entry 1kd3 coloured by chain, front view.
PDB entry 1kd3 coloured by chain, side view.
PDB entry 1kd3 coloured by chain, top view.
Source organism: Synthetic construct
Primary publication:
Crystal structures of r(GGUCACAGCCC)2.
Kacer V, Scaringe SA, Scarsdale JN, Rife JP
Acta Crystallogr D Biol Crystallogr 59 423-32 (2003)
PMID: 12595698

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-196083 (preferred)
Entry contents:
1 distinct RNA molecule
Macromolecule:
5'-R(*GP*GP*UP*CP*AP*CP*AP*GP*CP*CP*C)-3' Chains: A, B
Molecule details ›
Chains: A, B
Length: 11 nucleotides
Theoretical weight: 3.48 KDa
Source organism: Synthetic construct
Expression system: Not provided

Ligands and Environments

1 bound ligand:
Ligand TL 2 x TL
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU
Spacegroup: P43
Unit cell:
a: 44.232Å b: 44.232Å c: 49.87Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.215 0.215 0.241
Expression system: Not provided

Quick links

Citations

2 review citations

Nucleic acid crystallography: current progress.
Egli M. (2004)
1 more

1 mention without citation

Coarse-grained model for simulation of RNA three-dimensional structures.
Xia et al. (2010)