Reviews - 1l2b mentioned but not cited (2)
- Recent advances in the structural mechanisms of DNA glycosylases. Brooks SC, Adhikary S, Rubinson EH, Eichman BF. Biochim Biophys Acta 1834 247-271 (2013)
- The Fpg/Nei family of DNA glycosylases: substrates, structures, and search for damage. Prakash A, Doublié S, Wallace SS. Prog Mol Biol Transl Sci 110 71-91 (2012)
Articles - 1l2b mentioned but not cited (1)
- Structural classification of zinc fingers: survey and summary. Krishna SS, Majumdar I, Grishin NV. Nucleic Acids Res 31 532-550 (2003)
Reviews citing this publication (19)
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- The formamidopyrimidines: purine lesions formed in competition with 8-oxopurines from oxidative stress. Greenberg MM. Acc Chem Res 45 588-597 (2012)
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- Separation-of-function mutants unravel the dual-reaction mode of human 8-oxoguanine DNA glycosylase. Dalhus B, Forsbring M, Helle IH, Vik ES, Forstrøm RJ, Backe PH, Alseth I, Bjørås M. Structure 19 117-127 (2011)
- Kinetic conformational analysis of human 8-oxoguanine-DNA glycosylase. Kuznetsov NA, Koval VV, Nevinsky GA, Douglas KT, Zharkov DO, Fedorova OS. J Biol Chem 282 1029-1038 (2007)
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- Structural characterization of a mouse ortholog of human NEIL3 with a marked preference for single-stranded DNA. Liu M, Imamura K, Averill AM, Wallace SS, Doublié S. Structure 21 247-256 (2013)
- Entrapment and structure of an extrahelical guanine attempting to enter the active site of a bacterial DNA glycosylase, MutM. Qi Y, Spong MC, Nam K, Karplus M, Verdine GL. J Biol Chem 285 1468-1478 (2010)
- Pre-steady-state kinetics shows differences in processing of various DNA lesions by Escherichia coli formamidopyrimidine-DNA glycosylase. Koval VV, Kuznetsov NA, Zharkov DO, Ishchenko AA, Douglas KT, Nevinsky GA, Fedorova OS. Nucleic Acids Res 32 926-935 (2004)
- Structural characterization of viral ortholog of human DNA glycosylase NEIL1 bound to thymine glycol or 5-hydroxyuracil-containing DNA. Imamura K, Averill A, Wallace SS, Doublié S. J Biol Chem 287 4288-4298 (2012)
- A new protein architecture for processing alkylation damaged DNA: the crystal structure of DNA glycosylase AlkD. Rubinson EH, Metz AH, O'Quin J, Eichman BF. J Mol Biol 381 13-23 (2008)
- Tautomerization-dependent recognition and excision of oxidation damage in base-excision DNA repair. Zhu C, Lu L, Zhang J, Yue Z, Song J, Zong S, Liu M, Stovicek O, Gao YQ, Yi C. Proc Natl Acad Sci U S A 113 7792-7797 (2016)
- A novel nucleoid-associated protein specific to the actinobacteria. Swiercz JP, Nanji T, Gloyd M, Guarné A, Elliot MA. Nucleic Acids Res 41 4171-4184 (2013)
- Active destabilization of base pairs by a DNA glycosylase wedge initiates damage recognition. Kuznetsov NA, Bergonzo C, Campbell AJ, Li H, Mechetin GV, de los Santos C, Grollman AP, Fedorova OS, Zharkov DO, Simmerling C. Nucleic Acids Res 43 272-281 (2015)
- An Improved Reaction Coordinate for Nucleic Acid Base Flipping Studies. Song K, Campbell AJ, Bergonzo C, de Los Santos C, Grollman AP, Simmerling C. J Chem Theory Comput 5 3105-3113 (2009)
- Structural and biochemical studies of a plant formamidopyrimidine-DNA glycosylase reveal why eukaryotic Fpg glycosylases do not excise 8-oxoguanine. Duclos S, Aller P, Jaruga P, Dizdaroglu M, Wallace SS, Doublié S. DNA Repair (Amst) 11 714-725 (2012)
- Structural characterization of a viral NEIL1 ortholog unliganded and bound to abasic site-containing DNA. Imamura K, Wallace SS, Doublié S. J Biol Chem 284 26174-26183 (2009)
- A distinct role of formamidopyrimidine DNA glycosylase (MutM) in down-regulation of accumulation of G, C mutations and protection against oxidative stress in mycobacteria. Jain R, Kumar P, Varshney U. DNA Repair (Amst) 6 1774-1785 (2007)
- The oxidative DNA glycosylases of Mycobacterium tuberculosis exhibit different substrate preferences from their Escherichia coli counterparts. Guo Y, Bandaru V, Jaruga P, Zhao X, Burrows CJ, Iwai S, Dizdaroglu M, Bond JP, Wallace SS. DNA Repair (Amst) 9 177-190 (2010)
- Catalytic mechanism of Escherichia coli endonuclease VIII: roles of the intercalation loop and the zinc finger. Kropachev KY, Zharkov DO, Grollman AP. Biochemistry 45 12039-12049 (2006)
- Structure of the E. coli DNA glycosylase AlkA bound to the ends of duplex DNA: a system for the structure determination of lesion-containing DNA. Bowman BR, Lee S, Wang S, Verdine GL. Structure 16 1166-1174 (2008)
- Structural insights into abasic site for Fpg specific binding and catalysis: comparative high-resolution crystallographic studies of Fpg bound to various models of abasic site analogues-containing DNA. Pereira de Jésus K, Serre L, Zelwer C, Castaing B. Nucleic Acids Res 33 5936-5944 (2005)
- Kinetic basis of nucleotide selection employed by a protein template-dependent DNA polymerase. Brown JA, Fowler JD, Suo Z. Biochemistry 49 5504-5510 (2010)
- Plant and fungal Fpg homologs are formamidopyrimidine DNA glycosylases but not 8-oxoguanine DNA glycosylases. Kathe SD, Barrantes-Reynolds R, Jaruga P, Newton MR, Burrows CJ, Bandaru V, Dizdaroglu M, Bond JP, Wallace SS. DNA Repair (Amst) 8 643-653 (2009)
- Unusual structural features of hydantoin lesions translate into efficient recognition by Escherichia coli Fpg. Krishnamurthy N, Muller JG, Burrows CJ, David SS. Biochemistry 46 9355-9365 (2007)
- Strandwise translocation of a DNA glycosylase on undamaged DNA. Qi Y, Nam K, Spong MC, Banerjee A, Banerjee A, Sung RJ, Zhang M, Karplus M, Verdine GL. Proc Natl Acad Sci U S A 109 1086-1091 (2012)
- Structure of the uncomplexed DNA repair enzyme endonuclease VIII indicates significant interdomain flexibility. Golan G, Zharkov DO, Feinberg H, Fernandes AS, Zaika EI, Kycia JH, Grollman AP, Shoham G. Nucleic Acids Res 33 5006-5016 (2005)
- Lesion search and recognition by thymine DNA glycosylase revealed by single molecule imaging. Buechner CN, Maiti A, Drohat AC, Tessmer I. Nucleic Acids Res 43 2716-2729 (2015)
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- Pre-organized structure of viral DNA at the binding-processing site of HIV-1 integrase. Renisio JG, Cosquer S, Cherrak I, El Antri S, Mauffret O, Fermandjian S. Nucleic Acids Res 33 1970-1981 (2005)
- Solution-state NMR investigation of DNA binding interactions in Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg): a dynamic description of the DNA/protein interface. Buchko GW, McAteer K, Wallace SS, Kennedy MA. DNA Repair (Amst) 4 327-339 (2005)
- A sequence-specific DNA glycosylase mediates restriction-modification in Pyrococcus abyssi. Miyazono K, Furuta Y, Watanabe-Matsui M, Miyakawa T, Ito T, Kobayashi I, Tanokura M. Nat Commun 5 3178 (2014)
- Analysis of CASP8 targets, predictions and assessment methods. Shi S, Pei J, Sadreyev RI, Kinch LN, Majumdar I, Tong J, Cheng H, Kim BH, Grishin NV. Database (Oxford) 2009 bap003 (2009)
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