1li1 Citations

The 1.9-A crystal structure of the noncollagenous (NC1) domain of human placenta collagen IV shows stabilization via a novel type of covalent Met-Lys cross-link.

Proc Natl Acad Sci U S A 99 6607-12 (2002)
Cited: 67 times
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Abstract

Triple-helical collagen IV protomers associate through their N- and C-termini forming a three-dimensional network, which provides basement membranes with an anchoring scaffold and mechanical strength. The noncollagenous (NC1) domain of the C-terminal junction between two adjacent collagen IV protomers from human placenta was crystallized and its 1.9-A structure was solved by multiple anomalous diffraction (MAD) phasing. This hexameric NC1 particle is composed of two trimeric caps, which interact through a large planar interface. Each cap is formed by two alpha 1 fragments and one alpha 2 fragment with a similar previously uncharacterized fold, segmentally arranged around an axial tunnel. Each monomer chain folds into two structurally very similar subdomains, which each contain a finger-like hairpin loop that inserts into a six-stranded beta-sheet of the neighboring subdomain of the same or the adjacent chain. Thus each trimer forms a quite regular, but nonclassical, sixfold propeller. The trimer-trimer interaction is further stabilized by a previously uncharacterized type of covalent cross-link between the side chains of a Met and a Lys residue of the alpha 1 and alpha 2 chains from opposite trimers, explaining previous findings of nonreducible cross-links in NC1. This structure provides insights into NC1-related diseases such as Goodpasture and Alport syndromes.

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Articles - 1li1 mentioned but not cited (14)

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  17. Autoepitopes and alloepitopes of type IV collagen: role in the molecular pathogenesis of anti-GBM antibody glomerulonephritis. Borza DB. Nephron Exp Nephrol 106 e37-43 (2007)
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  21. Collagen IV Exploits a Cl- Step Gradient for Scaffold Assembly. Ivanov SV, Bauer R, Pokidysheva EN, Boudko SP. Adv Exp Med Biol 21 129-141 (2021)

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  3. Collagen stabilization at atomic level: crystal structure of designed (GlyProPro)10foldon. Stetefeld J, Frank S, Jenny M, Schulthess T, Kammerer RA, Boudko S, Landwehr R, Okuyama K, Engel J. Structure 11 339-346 (2003)
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  5. Crystal structure of human collagen XVIII trimerization domain: A novel collagen trimerization Fold. Boudko SP, Sasaki T, Engel J, Lerch TF, Nix J, Chapman MS, Bächinger HP. J Mol Biol 392 787-802 (2009)
  6. Structure formation in the C terminus of type III collagen guides disulfide cross-linking. Boudko SP, Engel J. J Mol Biol 335 1289-1297 (2004)
  7. A role for collagen IV cross-links in conferring immune privilege to the Goodpasture autoantigen: structural basis for the crypticity of B cell epitopes. Vanacore RM, Ham AJ, Cartailler JP, Sundaramoorthy M, Todd P, Pedchenko V, Sado Y, Borza DB, Hudson BG. J Biol Chem 283 22737-22748 (2008)
  8. Defining elastic fiber interactions by molecular fishing: an affinity purification and mass spectrometry approach. Cain SA, McGovern A, Small E, Ward LJ, Baldock C, Shuttleworth A, Kielty CM. Mol Cell Proteomics 8 2715-2732 (2009)
  9. Alport alloantibodies but not Goodpasture autoantibodies induce murine glomerulonephritis: protection by quinary crosslinks locking cryptic α3(IV) collagen autoepitopes in vivo. Luo W, Wang XP, Kashtan CE, Borza DB. J Immunol 185 3520-3528 (2010)
  10. Detection of differentially expressed basal cell proteins by mass spectrometry. Todorović V, Desai BV, Eigenheer RA, Yin T, Amargo EV, Mrksich M, Green KJ, Patterson MJ. Mol Cell Proteomics 9 351-361 (2010)
  11. The crystal structure of the streptococcal collagen-like protein 2 globular domain from invasive M3-type group A Streptococcus shows significant similarity to immunomodulatory HIV protein gp41. Squeglia F, Bachert B, De Simone A, Lukomski S, Berisio R. J Biol Chem 289 5122-5133 (2014)
  12. Crystal structure of the human collagen XV trimerization domain: a potent trimerizing unit common to multiplexin collagens. Wirz JA, Boudko SP, Lerch TF, Chapman MS, Bächinger HP. Matrix Biol 30 9-15 (2011)
  13. Structural insight for chain selection and stagger control in collagen. Boudko SP, Bächinger HP. Sci Rep 6 37831 (2016)
  14. Noncollagenous region of the streptococcal collagen-like protein is a trimerization domain that supports refolding of adjacent homologous and heterologous collagenous domains. Yu Z, Mirochnitchenko O, Xu C, Yoshizumi A, Brodsky B, Inouye M. Protein Sci 19 775-785 (2010)
  15. Collagen IV-derived peptide binds hydrophobic cavity of Legionella pneumophila Mip and interferes with bacterial epithelial transmigration. Ünal C, Schwedhelm KF, Thiele A, Weiwad M, Schweimer K, Frese F, Fischer G, Hacker J, Faber C, Steinert M. Cell Microbiol 13 1558-1572 (2011)
  16. Extracellular Matrix and Oxidative Phosphorylation: Important Role in the Regulation of Hypothalamic Function by Gut Microbiota. Qi X, Zhong X, Xu S, Zeng B, Chen J, Zang G, Zeng L, Bai S, Zhou C, Wei H, Xie P. Front Genet 11 520 (2020)
  17. Identification of noncollagenous sites encoding specific interactions and quaternary assembly of alpha 3 alpha 4 alpha 5(IV) collagen: implications for Alport gene therapy. Kang JS, Colon S, Hellmark T, Sado Y, Hudson BG, Borza DB. J Biol Chem 283 35070-35077 (2008)
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  22. Dogfish egg case structural studies by ATR FT-IR and FT-Raman spectroscopy. Iconomidou VA, Georgaka ME, Chryssikos GD, Gionis V, Megalofonou P, Hamodrakas SJ. Int J Biol Macromol 41 102-108 (2007)
  23. Hydrogen selenide, a vital metabolite of sodium selenite, uncouples the sulfilimine bond and promotes the reversal of liver fibrosis. Luan D, Zhao Z, Xia D, Zheng Q, Gao X, Xu K, Tang B. Sci China Life Sci 64 443-451 (2021)
  24. Impact of heparan sulfate chains and sulfur-mediated bonds on the mechanical properties of bovine lens capsule. Dyksterhuis LB, White JF, Hickey M, Kirby N, Mudie S, Hawley A, Vashi A, Nigro J, Werkmeister JA, Ramshaw JA. Biophys J 100 2077-2083 (2011)
  25. The NC1 dimer of human placental basement membrane collagen IV: does a covalent crosslink exist? Than ME, Bourenkov GP, Henrich S, Mann K, Bode W. Biol Chem 386 759-766 (2005)
  26. Novel covalent bond in proteins: calculations on model systems question the bond stability. Ončák M, Berka K, Slavíček P. Chemphyschem 12 3449-3457 (2011)
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  28. Collagen IV of basement membranes: IV. Adaptive mechanism of collagen IV scaffold assembly in Drosophila. Summers JA, Yarbrough M, Liu M, McDonald WH, Hudson BG, Pastor-Pareja JC, Boudko SP. J Biol Chem 299 105394 (2023)
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