Ligands and environments ‹ 1qi7 ‹ Protein Data Bank in Europe (PDBe)

1 bound ligand:

SO4 301(A) Environment details ›

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/package.js

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Jmol JavaScript applet _PDBE_JMOL__39429628449456__ initializing

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Jmol Version: 14.3.6_2014.08.17b 2014-08-17 17:24

java.vendor: Java2Script (HTML5)

java.version: JSmol 14.3.6_2014.08.14

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Jmol applet _PDBE_JMOL__39429628449456__ ready

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js

script 1 started

FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/1qi7.cif)

FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/1qi7.cif

The Resolver thinks MMCif

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/MMCifReader.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/adapter/readers/cif/CifReader.js

-- required by J.adapter.readers.cif.MMCifReader

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/CifDataParser.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corebio.z.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/render/MeshRenderer.js

-- required by J.renderbio.BioShapeRenderer

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Mesh.js

TITLE: The crystal structure of saporin SO6 from Saponaria officinalis and its interaction with the ribosome.

Setting space group name to HM:P 43 2 2

found biomolecule 1: A,B,C

found biomolecule 2: A,B,C

assembly operator 1 x,y,z

assembly operator 2 x,-y,-z+1/2

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

unknown CIF bond order: doub

unknown CIF bond order: sing

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js

Time for openFile(*1qi7): 2484 ms

reading 2135 atoms

ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false

1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.

Default Van der Waals type for model set to Jmol

2135 atoms created

ModelSet: autobonding; use autobond=false to not generate bonds automatically

TITLE: The crystal structure of saporin SO6 from Saponaria officinalis and its interaction with the ribosome.

found biomolecule 1: A,B,C

found biomolecule 2: A,B,C

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptmath.z.js

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script 2 started

antialiasDisplay = true

antialiasTranslucent = true

debugScript = false

showScript = 0

chainCaseSensitive = true

measurementUnits = "angstroms"

autobond = true

forceAutoBond = true

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptcmd.z.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Halos.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shapesurface/Contact.js

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-- required by J.shapesurface.Contact

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-- required by J.shapesurface.Isosurface

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/XmlUtil.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/c/HB.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/ContactPair.js

contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;

Contact pairs: 3

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/jvxl/readers/IsoIntersectReader.js

Contacts: 3 with net volume 3.1726270070667586 A^3

RasMol pseudo-hbond calculation

0 hydrogen bonds

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coretext.z.js

Script completed

Jmol script terminated

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/render/HalosRenderer.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/g3d/CircleRenderer.js

s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/rendersurface/ContactRenderer.js

No modified residues

PDBe › 1qi7 › Ligands and Environments

1 bound ligand:

Quick links

1qi7 › Ligands and Environments