› 1svi

X-ray diffraction
1.95Å resolution

Crystal Structure of the GTP-binding protein YsxC complexed with GDP

Released:
DOI: 10.2210/pdb1svi/pdb
PDB entry 1svi coloured by chain, front view.
PDB entry 1svi coloured by chain, side view.
PDB entry 1svi coloured by chain, top view.
Source organism: Bacillus subtilis
Primary publication:
Analysis of the open and closed conformations of the GTP-binding protein YsxC from Bacillus subtilis.
Ruzheinikov SN, Das SK, Sedelnikova SE, Baker PJ, Artymiuk PJ, García-Lara J, Foster SJ, Rice DW
J Mol Biol 339 265-78 (2004)
PMID: 15136032

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-153649 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Probable GTP-binding protein EngB Chain: A
Molecule details ›
Chain: A
Length: 195 amino acids
Theoretical weight: 22.06 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli
UniProt:
  • Canonical: P38424 (Residues: 1-195; Coverage: 100%)
Gene names: BSU28190, engB, ysxC
Sequence domains: 50S ribosome-binding GTPase
Structure domains: P-loop containing nucleotide triphosphate hydrolases

Ligands and Environments

1 bound ligand:
Ligand GDP 1 x GDP
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU RU200
Spacegroup: C2
Unit cell:
a: 46.179Å b: 68.305Å c: 61.999Å
α: 90° β: 94.05° γ: 90°
R-values:
R R work R free
0.178 0.176 0.222
Expression system: Escherichia coli

Quick links

Citations

5 review citations

Structure-function relationships of the G domain, a canonical switch motif.
Wittinghofer et al. (2011)
4 more

3 mentions without citation

The universally conserved prokaryotic GTPases.
Verstraeten et al. (2011)
2 more