› 1vf8

X-ray diffraction
1.31Å resolution

The Crystal Structure of Ym1 at 1.31 A Resolution

Released:
DOI: 10.2210/pdb1vf8/pdb
PDB entry 1vf8 coloured by chain, front view.
PDB entry 1vf8 coloured by chain, side view.
PDB entry 1vf8 coloured by chain, top view.
Source organism: Mus musculus
Primary publication:
The crystal structure of Ym1 at 1.31 A resolution.
Tsai ML, Liaw SH, Chang NC
J Struct Biol 148 290-6 (2004)
PMID: 15522777

Function and Biology Details

Reaction catalysed: 
Hydrolysis of terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides
Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domains:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-128712 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Chitinase-like protein 3 Chain: A
Molecule details ›
Chain: A
Length: 377 amino acids
Theoretical weight: 42.37 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: O35744 (Residues: 22-398; Coverage: 100%)
Gene names: Chi3l3, Chil3, Ym1
Sequence domains: Glycosyl hydrolases family 18
Structure domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSRRC BEAMLINE BL17B2
Spacegroup: P21
Unit cell:
a: 50.611Å b: 60.123Å c: 60.106Å
α: 90° β: 94.67° γ: 90°
R-values:
R R work R free
0.175 0.175 0.197

Quick links

Citations

3 review citations

Insect chitinase and chitinase-like proteins.
Arakane et al. (2010)
2 more

7 mentions without citation

Structure of human stabilin-1 interacting chitinase-like protein (SI-CLP) reveals a saccharide-binding cleft with lower sugar-binding selectivity.
Meng et al. (2010)
6 more