Function and Biology

CRYSTAL STRUCTURE OF A PUTATIVE DNA-BINDING PROTEIN (CC_0111) FROM CAULOBACTER CRESCENTUS CB15 AT 1.62 A RESOLUTION

Source organism: Caulobacter vibrioides CB15
Biochemical function: DNA binding
Biological process: aminoacyl-tRNA metabolism involved in translational fidelity
Cellular component: not assigned

GO terms

Biochemical function:
Biological process:
Cellular component:
  • not assigned

Sequence family

Pfam Protein family (Pfam)
PF04073
Domain description: Aminoacyl-tRNA editing domain
Occurring in:
  1. YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
The deposited structure of PDB entry 1vjf contains 1 copy of Pfam domain PF04073 (Aminoacyl-tRNA editing domain) in YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR036754
Domain description: YbaK/aminoacyl-tRNA synthetase-associated domain superfamily
Occurring in:
  1. YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
IPR007214
Domain description: YbaK/aminoacyl-tRNA synthetase-associated domain
Occurring in:
  1. YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
IPR040285
Domain description: Prolyl-tRNA editing protein ProX/PRXD1
Occurring in:
  1. YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein

Structure domain

CATH CATH domain
3.90.960.10
Class: Alpha Beta
Architecture: Alpha-Beta Complex
Topology: YbaK protein
Homology: YbaK/aminoacyl-tRNA synthetase-associated domain
Occurring in:
  1. YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
The deposited structure of PDB entry 1vjf contains 1 copy of CATH domain 3.90.960.10 (YbaK protein) in YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein. Showing 1 copy in chain A.
SCOP SCOP annotation
55827
Class: Alpha and beta proteins (a+b)
Fold: YbaK/ProRS associated domain
Superfamily: YbaK/ProRS associated domain
Occurring in:
  1. YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein
The deposited structure of PDB entry 1vjf contains 1 copy of SCOP domain 55827 (YbaK/ProRS associated domain) in YbaK/aminoacyl-tRNA synthetase-associated domain-containing protein. Showing 1 copy in chain A.