› 1vjm

X-ray diffraction
2.3Å resolution

Deformation of helix C in the low-temperature L-intermediate of bacteriorhodopsin

Released:
DOI: 10.2210/pdb1vjm/pdb
PDB entry 1vjm coloured by chain, ensemble of 2 models, front view.
PDB entry 1vjm coloured by chain, ensemble of 2 models, side view.
PDB entry 1vjm coloured by chain, ensemble of 2 models, top view.
Source organism: Halobacterium sp.
Primary publication:
Deformation of helix C in the low temperature L-intermediate of bacteriorhodopsin.
Edman K, Royant A, Larsson G, Jacobson F, Taylor T, van der Spoel D, Landau EM, Pebay-Peyroula E, Neutze R
J Biol Chem 279 2147-58 (2004)
PMID: 14532280

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assemblies composition:
homo trimer
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-136411 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Bacteriorhodopsin Chain: A
Molecule details ›
Chain: A
Length: 249 amino acids
Theoretical weight: 26.93 KDa
Source organism: Halobacterium sp.
UniProt:
  • Canonical: P02945 (Residues: 14-262; Coverage: 95%)
Gene names: VNG_1467G, bop
Sequence domains: Bacteriorhodopsin-like protein
Structure domains: Rhodopsin 7-helix transmembrane proteins

Ligands and Environments

1 bound ligand:
Ligand RET 1 x RET
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ESRF BEAMLINE ID14-2
Spacegroup: P63
Unit cell:
a: 60.87Å b: 60.87Å c: 109.5Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.257 0.252 0.298

Quick links

Citations

5 review citations

Advances in kinetic protein crystallography.
Bourgeois et al. (2005)
4 more

9 mentions without citation

A comprehensive review of the lipid cubic phase or in meso method for crystallizing membrane and soluble proteins and complexes.
Caffrey M. (2015)
8 more