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Crystal structure of L-proline dehydrogenase from P.horikoshii

Source organism: Pyrococcus horikoshii OT3
Biochemical function: oxidoreductase activity
Biological process: not assigned
Cellular component: cytoplasm

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GO terms

Biochemical function:
Biological process:
  • not assigned
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF07992
Domain description: Pyridine nucleotide-disulphide oxidoreductase
Occurring in:
  1. hypothetical protein PH1363
The deposited structure of PDB entry 1y56 contains 2 copies of Pfam domain PF07992 (Pyridine nucleotide-disulphide oxidoreductase) in hypothetical protein PH1363. Showing 2 copies in chain A.

PF01266
Domain description: FAD dependent oxidoreductase
Occurring in:
  1. FAD dependent oxidoreductase domain-containing protein
The deposited structure of PDB entry 1y56 contains 1 copy of Pfam domain PF01266 (FAD dependent oxidoreductase) in FAD dependent oxidoreductase domain-containing protein. Showing 1 copy in chain B.

PF17806
Domain description: Sarcosine oxidase A3 domain
Occurring in:
  1. hypothetical protein PH1363
The deposited structure of PDB entry 1y56 contains 1 copy of Pfam domain PF17806 (Sarcosine oxidase A3 domain) in hypothetical protein PH1363. Showing 1 copy in chain A.

PF13510
Domain description: 2Fe-2S iron-sulfur cluster binding domain
Occurring in:
  1. hypothetical protein PH1363
The deposited structure of PDB entry 1y56 contains 1 copy of Pfam domain PF13510 (2Fe-2S iron-sulfur cluster binding domain) in hypothetical protein PH1363. Showing 1 copy in chain A.

InterPro InterPro annotations
IPR036188
Domain description: FAD/NAD(P)-binding domain superfamily
Occurring in:
  1. hypothetical protein PH1363
  2. FAD dependent oxidoreductase domain-containing protein
IPR023753
Domain description: FAD/NAD(P)-binding domain
Occurring in:
  1. hypothetical protein PH1363
IPR006076
Domain description: FAD dependent oxidoreductase
Occurring in:
  1. FAD dependent oxidoreductase domain-containing protein
IPR041117
Domain description: SoxA, A3 domain
Occurring in:
  1. hypothetical protein PH1363
IPR041854
Domain description: BFD-like [2Fe-2S]-binding domain superfamily
Occurring in:
  1. hypothetical protein PH1363
IPR042204
Domain description: 2Fe-2S iron-sulfur cluster binding domain, N-terminal
Occurring in:
  1. hypothetical protein PH1363

Structure domains

CATH CATH domains
3.50.50.60
Class: Alpha Beta
Architecture: 3-Layer(bba) Sandwich
Topology: FAD/NAD(P)-binding domain
Homology: FAD/NAD(P)-binding domain
Occurring in:
  1. hypothetical protein PH1363
  2. FAD dependent oxidoreductase domain-containing protein
The deposited structure of PDB entry 1y56 contains 1 copy of CATH domain 3.50.50.60 (FAD/NAD(P)-binding domain) in hypothetical protein PH1363. Showing 1 copy in chain A.
The deposited structure of PDB entry 1y56 contains 1 copy of CATH domain 3.50.50.60 (FAD/NAD(P)-binding domain) in FAD dependent oxidoreductase domain-containing protein. Showing 1 copy in chain B.
3.30.9.10
Class: Alpha Beta
Architecture: 2-Layer Sandwich
Topology: D-Amino Acid Oxidase; Chain A, domain 2
Homology: D-Amino Acid Oxidase, subunit A, domain 2
Occurring in:
  1. FAD dependent oxidoreductase domain-containing protein
The deposited structure of PDB entry 1y56 contains 1 copy of CATH domain 3.30.9.10 (D-Amino Acid Oxidase; Chain A, domain 2) in FAD dependent oxidoreductase domain-containing protein. Showing 1 copy in chain B.
1.10.10.1100
Class: Mainly Alpha
Architecture: Orthogonal Bundle
Topology: Arc Repressor Mutant, subunit A
Homology: BFD-like [2Fe-2S]-binding domain
Occurring in:
  1. hypothetical protein PH1363
The deposited structure of PDB entry 1y56 contains 1 copy of CATH domain 1.10.10.1100 (Arc Repressor Mutant, subunit A) in hypothetical protein PH1363. Showing 1 copy in chain A.
3.10.20.440
Class: Alpha Beta
Architecture: Roll
Topology: Ubiquitin-like (UB roll)
Homology: 2Fe-2S iron-sulphur cluster binding domain, sarcosine oxidase, alpha subunit, N-terminal domain
Occurring in:
  1. hypothetical protein PH1363
The deposited structure of PDB entry 1y56 contains 1 copy of CATH domain 3.10.20.440 (Ubiquitin-like (UB roll)) in hypothetical protein PH1363. Showing 1 copy in chain A.

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