Articles - 2bqa mentioned but not cited (2)
- Interatomic potentials and solvation parameters from protein engineering data for buried residues. Lomize AL, Reibarkh MY, Pogozheva ID. Protein Sci 11 1984-2000 (2002)
- Data on the application of the molecular vector machine model: A database of protein pentafragments and computer software for predicting and designing secondary protein structures. Karasev V. Data Brief 28 104815 (2020)
Reviews citing this publication (3)
- Instability, stabilization, and formulation of liquid protein pharmaceuticals. Wang W. Int J Pharm 185 129-188 (1999)
- Understanding noncovalent interactions: ligand binding energy and catalytic efficiency from ligand-induced reductions in motion within receptors and enzymes. Williams DH, Stephens E, O'Brien DP, Zhou M. Angew Chem Int Ed Engl 43 6596-6616 (2004)
- Slow unfolding of monomeric proteins from hyperthermophiles with reversible unfolding. Mukaiyama A, Takano K. Int J Mol Sci 10 1369-1385 (2009)
Articles citing this publication (27)
- Contribution of hydrophobic interactions to protein stability. Pace CN, Fu H, Fryar KL, Landua J, Trevino SR, Shirley BA, Hendricks MM, Iimura S, Gajiwala K, Scholtz JM, Grimsley GR. J Mol Biol 408 514-528 (2011)
- Four-body potentials reveal protein-specific correlations to stability changes caused by hydrophobic core mutations. Carter CW, LeFebvre BC, Cammer SA, Tropsha A, Edgell MH. J Mol Biol 311 625-638 (2001)
- The C-type lectin fold as an evolutionary solution for massive sequence variation. McMahon SA, Miller JL, Lawton JA, Kerkow DE, Hodes A, Marti-Renom MA, Doulatov S, Narayanan E, Sali A, Miller JF, Ghosh P. Nat Struct Mol Biol 12 886-892 (2005)
- Disulfide bond effects on protein stability: designed variants of Cucurbita maxima trypsin inhibitor-V. Zavodszky M, Chen CW, Huang JK, Zolkiewski M, Wen L, Krishnamoorthi R. Protein Sci 10 149-160 (2001)
- Buried water molecules contribute to the conformational stability of a protein. Takano K, Yamagata Y, Yutani K. Protein Eng 16 5-9 (2003)
- Are the parameters of various stabilization factors estimated from mutant human lysozymes compatible with other proteins? Funahashi J, Takano K, Yutani K. Protein Eng 14 127-134 (2001)
- Contribution of amino acid substitutions at two different interior positions to the conformational stability of human lysozyme. Funahashi J, Takano K, Yamagata Y, Yutani K. Protein Eng 12 841-850 (1999)
- Experimental verification of the 'stability profile of mutant protein' (SPMP) data using mutant human lysozymes. Takano K, Ota M, Ogasahara K, Yamagata Y, Nishikawa K, Yutani K. Protein Eng 12 663-672 (1999)
- Average assignment method for predicting the stability of protein mutants. Saraboji K, Gromiha MM, Ponnuswamy MN. Biopolymers 82 80-92 (2006)
- Effect of foreign N-terminal residues on the conformational stability of human lysozyme. Takano K, Tsuchimori K, Yamagata Y, Yutani K. Eur J Biochem 266 675-682 (1999)
- Hyper-thermostability of CutA1 protein, with a denaturation temperature of nearly 150 degrees C. Tanaka T, Sawano M, Ogasahara K, Sakaguchi Y, Bagautdinov B, Katoh E, Kuroishi C, Shinkai A, Yokoyama S, Yutani K. FEBS Lett 580 4224-4230 (2006)
- Amino acid sequence autocorrelation vectors and Bayesian-regularized genetic neural networks for modeling protein conformational stability: gene V protein mutants. Fernández L, Caballero J, Abreu JI, Fernández M. Proteins 67 834-852 (2007)
- Hydrophobic effect on the stability and folding of a hyperthermophilic protein. Dong H, Mukaiyama A, Tadokoro T, Koga Y, Takano K, Kanaya S. J Mol Biol 378 264-272 (2008)
- Mutational analysis of differences in thermostability between histones from mesophilic and hyperthermophilic archaea. Li WT, Shriver JW, Reeve JN. J Bacteriol 182 812-817 (2000)
- Mutagenesis for improvement of activity and thermostability of amylomaltase from Corynebacterium glutamicum. Nimpiboon P, Kaulpiboon J, Krusong K, Nakamura S, Kidokoro S, Pongsawasdi P. Int J Biol Macromol 86 820-828 (2016)
- Role of non-glycine residues in left-handed helical conformation for the conformational stability of human lysozyme. Takano K, Yamagata Y, Yutani K. Proteins 44 233-243 (2001)
- Role of amino acid residues in left-handed helical conformation for the conformational stability of a protein. Takano K, Yamagata Y, Yutani K. Proteins 45 274-280 (2001)
- Effects of core-packing on the structure, function, and mechanics of a four-helix-bundle protein ROP. Ceruso MA, Grottesi A, Di Nola A. Proteins 36 436-446 (1999)
- Stabilization of proteins by enhancement of inter-residue hydrophobic contacts: lessons of T4 lysozyme and barnase. Golovanov AP, Vergoten G, Arseniev AS. J Biomol Struct Dyn 18 477-491 (2000)
- Use of surface area computations to describe atom-atom interactions. de La Cruz X, Calvo M. J Comput Aided Mol Des 15 521-532 (2001)
- Capturing a Crucial 'Disorder-to-Order Transition' at the Heart of the Coronavirus Molecular Pathology-Triggered by Highly Persistent, Interchangeable Salt-Bridges. Roy S, Ghosh P, Bandyopadhyay A, Basu S. Vaccines (Basel) 10 301 (2022)
- In vitro enzymatic conversion of γ-aminobutyric acid immobilization of glutamate decarboxylase with bacterial cellulose membrane (BCM) and non-linear model establishment. Yao W, Wu X, Zhu J, Sun B, Miller C. Enzyme Microb Technol 52 258-264 (2013)
- Molecular dynamics study of naturally existing cavity couplings in proteins. Barbany M, Meyer T, Hospital A, Faustino I, D'Abramo M, Morata J, Orozco M, de la Cruz X. PLoS One 10 e0119978 (2015)
- Stabilization mechanism of the tryptophan synthase alpha-subunit from Thermus thermophilus HB8: X-ray crystallographic analysis and calorimetry. Asada Y, Sawano M, Ogasahara K, Nakamura J, Ota M, Kuroishi C, Sugahara M, Yutani K, Kunishima N. J Biochem 138 343-353 (2005)
- Mechanisms of Action of Cassiae Semen for Weight Management: A Computational Molecular Docking Study of Serotonin Receptor 5-HT2C. Yuen H, Hung A, Yang AWH, Lenon GB. Int J Mol Sci 21 E1326 (2020)
- Stabilization due to dimer formation of phosphoribosyl anthranilate isomerase from Thermus thermophilus HB8: X-ray Analysis and DSC experiments. Taka J, Ogasahara K, Jeyakanthan J, Kunishima N, Kuroishi C, Sugahara M, Yokoyama S, Yutani K. J Biochem 137 569-578 (2005)
- Structural basis for the appearance of a molten globule state in chimeric molecules derived from lysozyme and alpha-lactalbumin. Joniau M, Haezebrouck P, Noyelle K, Van Dael H. Proteins 44 1-11 (2001)
Related citations provided by authors (7)
- Contribution of Hydrogen Bonds to the Conformational Stability of Human Lysozyme: Calorimetry and X-Ray Analysis of Six Tyrosine--> Phenylalanine Mutants. Yamagata Y, Kubota M, Sumikawa Y, Funahashi J, Takano K, Fujii S, Yutani K Biochemistry 37 9355- (1998)
- Contribution of the Hydrophobic Effect to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analyses of the Nine Valine to Alanine Mutants. Takano K, Yamagata Y, Fujii S, Yutani K Biochemistry 36 688- (1997)
- Contribution of Water Molecules in the Interior of a Protein to the Conformational Stability. Takano K, Funahashi J, Yamagata Y, Fujii S, Yutani K J. Mol. Biol. 274 132- (1997)
- The Structure, Stability, and Folding Process of Amyloidogenic Mutant Human Lysozyme. Funahashi J, Takano K, Ogasahara K, Yamagata Y, Yutani K J. Biochem. 120 1216- (1996)
- Contribution of Hydrophobic Residues to the Stability of Human Lysozyme: Calorimetric Studies and X-Ray Structural Analysis of the Five Isoleucine to Valine Mutants. Takano K, Ogasahara K, Kaneda H, Yamagata Y, Fujii S, Kanaya E, Kikuchi M, Oobatake M, Yutani K J. Mol. Biol. 254 62- (1995)
- Enthalpic Destabilization of a Mutant Human Lysozyme Lacking a Disulfide Bridge between Cysteine-77 and Cysteine-95. Kuroki R, Inaka K, Taniyama Y, Kidokoro S, Matsushima M, Kikuchi M, Yutani K Biochemistry 31 8323- (1992)
- The Crystal Structure of a Mutant Human Lysozyme C77/95A with Increased Secretion Efficiency in Yeast. Inaka K, Taniyama Y, Kikuchi M, Morikawa K, Matsushima M J. Biol. Chem. 266 12599- (1991)