› 2d5g

X-ray diffraction
3.2Å resolution

Structure of ubiquitin fold protein R767E mutant

Released:
DOI: 10.2210/pdb2d5g/pdb
PDB entry 2d5g coloured by chain, front view.
PDB entry 2d5g coloured by chain, side view.
PDB entry 2d5g coloured by chain, top view.
Source organism: Rattus norvegicus
Entry authors: Shibata N, Higuchi Y

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
Cellular component:
  • not assigned
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-130685 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Axin-1 Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 85 amino acids
Theoretical weight: 9.8 KDa
Source organism: Rattus norvegicus
Expression system: Escherichia coli
UniProt:
  • Canonical: O70239 (Residues: 743-827; Coverage: 10%)
Gene names: Axin, Axin1
Sequence domains: DIX domain
Structure domains: Ribosomal Protein L25; Chain P

Ligands and Environments

1 bound ligand:
Ligand HG 10 x HG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: PHOTON FACTORY BEAMLINE BL-5A
Spacegroup: R3
Unit cell:
a: 125.55Å b: 125.55Å c: 115.43Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.238 0.228 0.314
Expression system: Escherichia coli

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