› 2dsy

X-ray diffraction
1.9Å resolution

Crystal structure of TTHA0281 from thermus thermophilus HB8

Released:
DOI: 10.2210/pdb2dsy/pdb
PDB entry 2dsy coloured by chain, front view.
PDB entry 2dsy coloured by chain, side view.
PDB entry 2dsy coloured by chain, top view.
Source organism: Thermus thermophilus
Primary publication:
Structure of a UPF0150-family protein from Thermus thermophilus HB8.
Okazaki N, Kumei M, Manzoku M, Kuramitsu S, Shirouzu M, Shinkai A, Yokoyama S
Acta Crystallogr Sect F Struct Biol Cryst Commun 63 173-7 (2007)
PMID: 17329807

Function and Biology Details

Biochemical function:
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:
Structure domain:

Structure analysis Details

Assembly composition:
homo tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-178178 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Type II toxin-antitoxin system HicB family antitoxin Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 87 amino acids
Theoretical weight: 9.83 KDa
Source organism: Thermus thermophilus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q5SLL2 (Residues: 1-87; Coverage: 100%)
Gene name: TTHA0281
Sequence domains: UPF0150-like
Structure domains: Double Stranded RNA Binding Domain

Ligands and Environments

2 bound ligands:
Ligand MG 1 x MG
Ligand NHE 2 x NHE
1 modified residue:
Ligand MSE 12 x MSE

Experiments and Validation Details

Entry percentile scores
X-ray source: SPRING-8 BEAMLINE BL26B2
Spacegroup: P21
Unit cell:
a: 38.996Å b: 62.743Å c: 65.724Å
α: 90° β: 104.31° γ: 90°
R-values:
R R work R free
0.185 0.183 0.232
Expression system: Escherichia coli

Quick links

Citations

1 citations in other articles

Crystal structure of uncharacterized protein TTHA1756 from Thermus thermophilus HB8: Structural variety in UPF0150 family proteins.
Ebihara et al. (2008)

1 mention without citation

Structure of a UPF0150-family protein from Thermus thermophilus HB8.
Okazaki et al. (2007)