› 2dzo

X-ray diffraction
3Å resolution

Crystal structure analysis of yeast Nas6p complexed with the proteasome subunit, rpt3

Released:
DOI: 10.2210/pdb2dzo/pdb
Model geometry
Fit model/data
Data not deposited
PDB entry 2dzo coloured by chain, front view.
PDB entry 2dzo coloured by chain, side view.
PDB entry 2dzo coloured by chain, top view.
Source organism: Saccharomyces cerevisiae
Entry authors: Nakamura Y, Padmanabhan B, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:
Sequence domains:
Structure domain:

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-152574 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Probable 26S proteasome regulatory subunit p28 Chains: A, C
Molecule details ›
Chains: A, C
Length: 228 amino acids
Theoretical weight: 25.65 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P50086 (Residues: 1-228; Coverage: 100%)
Gene names: G8564, NAS6, YGR232W
Sequence domains: Ankyrin repeat
Structure domains: Ankyrin repeat-containing domain
26S proteasome regulatory subunit 6B homolog Chains: B, D
Molecule details ›
Chains: B, D
Length: 82 amino acids
Theoretical weight: 9.21 KDa
Source organism: Saccharomyces cerevisiae
Expression system: Escherichia coli
UniProt:
  • Canonical: P33298 (Residues: 348-428; Coverage: 19%)
Gene names: D9509.14, RPT3, YDR394W, YNT1, YTA2
Structure domains: Helicase, Ruva Protein; domain 3

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: PHOTON FACTORY BEAMLINE BL-6A
Spacegroup: P31
Unit cell:
a: 99.599Å b: 99.599Å c: 73.082Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.212 0.212 0.282
Expression system: Escherichia coli

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