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- Mutations in DNA2 link progressive myopathy to mitochondrial DNA instability. Ronchi D, Di Fonzo A, Lin W, Bordoni A, Liu C, Fassone E, Pagliarani S, Rizzuti M, Zheng L, Filosto M, Ferrò MT, Ranieri M, Magri F, Peverelli L, Li H, Yuan YC, Corti S, Sciacco M, Moggio M, Bresolin N, Shen B, Comi GP. Am J Hum Genet 92 293-300 (2013)
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- Ensemble cryo-EM reveals conformational states of the nsp13 helicase in the SARS-CoV-2 helicase replication-transcription complex. Chen J, Wang Q, Malone B, Llewellyn E, Pechersky Y, Maruthi K, Eng ET, Perry JK, Campbell EA, Shaw DE, Darst SA. Nat Struct Mol Biol 29 250-260 (2022)
- In-silico prediction of drug targets, biological activities, signal pathways and regulating networks of dioscin based on bioinformatics. Yin L, Zheng L, Xu L, Dong D, Han X, Qi Y, Zhao Y, Xu Y, Peng J. BMC Complement Altern Med 15 41 (2015)
- In Silico Analysis of the Structural and Biochemical Features of the NMD Factor UPF1 in Ustilago maydis. Martínez-Montiel N, Morales-Lara L, Hernández-Pérez JM, Martínez-Contreras RD. PLoS One 11 e0148191 (2016)
Reviews citing this publication (32)
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- NMD: a multifaceted response to premature translational termination. Kervestin S, Jacobson A. Nat Rev Mol Cell Biol 13 700-712 (2012)
- The Nonstructural Proteins Directing Coronavirus RNA Synthesis and Processing. Snijder EJ, Decroly E, Ziebuhr J. Adv Virus Res 96 59-126 (2016)
- Translocation and unwinding mechanisms of RNA and DNA helicases. Pyle AM. Annu Rev Biophys 37 317-336 (2008)
- RNA helicases at work: binding and rearranging. Jankowsky E. Trends Biochem Sci 36 19-29 (2011)
- Nonsense-mediated mRNA decay in human cells: mechanistic insights, functions beyond quality control and the double-life of NMD factors. Nicholson P, Yepiskoposyan H, Metze S, Zamudio Orozco R, Kleinschmidt N, Mühlemann O. Cell Mol Life Sci 67 677-700 (2010)
- Nonsense-mediated mRNA decay - mechanisms of substrate mRNA recognition and degradation in mammalian cells. Schweingruber C, Rufener SC, Zünd D, Yamashita A, Mühlemann O. Biochim Biophys Acta 1829 612-623 (2013)
- Execution of nonsense-mediated mRNA decay: what defines a substrate? Rebbapragada I, Lykke-Andersen J. Curr Opin Cell Biol 21 394-402 (2009)
- RNA helicases--one fold for many functions. Jankowsky E, Fairman ME. Curr Opin Struct Biol 17 316-324 (2007)
- Staufen-mediated mRNA decay. Park E, Maquat LE. Wiley Interdiscip Rev RNA 4 423-435 (2013)
- Nonsense-mediated mRNA decay: novel mechanistic insights and biological impact. Karousis ED, Nasif S, Mühlemann O. Wiley Interdiscip Rev RNA 7 661-682 (2016)
- The meaning of nonsense. Stalder L, Mühlemann O. Trends Cell Biol 18 315-321 (2008)
- Nonsense-mediated RNA decay regulation by cellular stress: implications for tumorigenesis. Gardner LB. Mol Cancer Res 8 295-308 (2010)
- Nonsense-Mediated mRNA Decay Begins Where Translation Ends. Karousis ED, Mühlemann O. Cold Spring Harb Perspect Biol 11 a032862 (2019)
- Mechanism, factors, and physiological role of nonsense-mediated mRNA decay. Fatscher T, Boehm V, Gehring NH. Cell Mol Life Sci 72 4523-4544 (2015)
- The conformational plasticity of eukaryotic RNA-dependent ATPases. Ozgur S, Buchwald G, Falk S, Chakrabarti S, Prabu JR, Conti E. FEBS J 282 850-863 (2015)
- What we know but do not understand about nidovirus helicases. Lehmann KC, Snijder EJ, Posthuma CC, Gorbalenya AE. Virus Res 202 12-32 (2015)
- Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome. Kishor A, Fritz SE, Hogg JR. Wiley Interdiscip Rev RNA 10 e1548 (2019)
- Proteins involved in the degradation of cytoplasmic mRNA in the major eukaryotic model systems. Siwaszek A, Ukleja M, Dziembowski A. RNA Biol 11 1122-1136 (2014)
- NMD: At the crossroads between translation termination and ribosome recycling. Celik A, Kervestin S, Jacobson A. Biochimie 114 2-9 (2015)
- Gene expression networks: competing mRNA decay pathways in mammalian cells. Maquat LE, Gong C. Biochem Soc Trans 37 1287-1292 (2009)
- Structural basis for regulation of RNA-binding proteins by phosphorylation. Thapar R. ACS Chem Biol 10 652-666 (2015)
- Replication of the coronavirus genome: A paradox among positive-strand RNA viruses. Grellet E, L'Hôte I, Goulet A, Imbert I. J Biol Chem 298 101923 (2022)
- Upf proteins: highly conserved factors involved in nonsense mRNA mediated decay. Gupta P, Li YR. Mol Biol Rep 45 39-55 (2018)
- UPF1-Mediated RNA Decay-Danse Macabre in a Cloud. Lavysh D, Neu-Yilik G. Biomolecules 10 E999 (2020)
- Packing them up and dusting them off: RNA helicases and mRNA storage. Hooper C, Hilliker A. Biochim Biophys Acta 1829 824-834 (2013)
- Structural aspects of RNA helicases in eukaryotic mRNA decay. Ling SH, Cheng Z, Song H. Biosci Rep 29 339-349 (2009)
- Structural insights into nonsense-mediated mRNA decay (NMD) by electron microscopy. Llorca O. Curr Opin Struct Biol 23 161-167 (2013)
- UPF1-From mRNA Degradation to Human Disorders. Staszewski J, Lazarewicz N, Konczak J, Migdal I, Maciaszczyk-Dziubinska E. Cells 12 419 (2023)
- Eukaryotic mRNA decapping factors: molecular mechanisms and activity. He F, Jacobson A. FEBS J (2022)
- No-nonsense: insights into the functional interplay of nonsense-mediated mRNA decay factors. Mailliot J, Vivoli-Vega M, Schaffitzel C. Biochem J 479 973-993 (2022)
- Nonsense-Mediated mRNA Decay Factor Functions in Human Health and Disease. Sun L, Mailliot J, Schaffitzel C. Biomedicines 11 722 (2023)
Articles citing this publication (69)
- NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity. Chamieh H, Ballut L, Bonneau F, Le Hir H. Nat Struct Mol Biol 15 85-93 (2008)
- Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region. Eberle AB, Stalder L, Mathys H, Orozco RZ, Mühlemann O. PLoS Biol 6 e92 (2008)
- Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2. Chakrabarti S, Jayachandran U, Bonneau F, Fiorini F, Basquin C, Domcke S, Le Hir H, Conti E. Mol Cell 41 693-703 (2011)
- Upf1 ATPase-dependent mRNP disassembly is required for completion of nonsense- mediated mRNA decay. Franks TM, Singh G, Lykke-Andersen J. Cell 143 938-950 (2010)
- Structure of the hepatitis E virus-like particle suggests mechanisms for virus assembly and receptor binding. Guu TS, Liu Z, Ye Q, Mata DA, Li K, Yin C, Zhang J, Tao YJ. Proc Natl Acad Sci U S A 106 12992-12997 (2009)
- SMD and NMD are competitive pathways that contribute to myogenesis: effects on PAX3 and myogenin mRNAs. Gong C, Kim YK, Woeller CF, Tang Y, Maquat LE. Genes Dev 23 54-66 (2009)
- The SMG5-SMG7 heterodimer directly recruits the CCR4-NOT deadenylase complex to mRNAs containing nonsense codons via interaction with POP2. Loh B, Jonas S, Izaurralde E. Genes Dev 27 2125-2138 (2013)
- Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs. Zünd D, Gruber AR, Zavolan M, Mühlemann O. Nat Struct Mol Biol 20 936-943 (2013)
- A post-translational regulatory switch on UPF1 controls targeted mRNA degradation. Kurosaki T, Li W, Hoque M, Popp MW, Ermolenko DN, Tian B, Maquat LE. Genes Dev 28 1900-1916 (2014)
- The host nonsense-mediated mRNA decay pathway restricts Mammalian RNA virus replication. Balistreri G, Horvath P, Schweingruber C, Zünd D, McInerney G, Merits A, Mühlemann O, Azzalin C, Helenius A. Cell Host Microbe 16 403-411 (2014)
- Mechanistic basis of 5'-3' translocation in SF1B helicases. Saikrishnan K, Powell B, Cook NJ, Webb MR, Wigley DB. Cell 137 849-859 (2009)
- UPF1 association with the cap-binding protein, CBP80, promotes nonsense-mediated mRNA decay at two distinct steps. Hwang J, Sato H, Tang Y, Matsuda D, Maquat LE. Mol Cell 39 396-409 (2010)
- Amelioration of toxicity in neuronal models of amyotrophic lateral sclerosis by hUPF1. Barmada SJ, Ju S, Arjun A, Batarse A, Archbold HC, Peisach D, Li X, Zhang Y, Tank EM, Qiu H, Huang EJ, Ringe D, Petsko GA, Finkbeiner S. Proc Natl Acad Sci U S A 112 7821-7826 (2015)
- Attenuation of nonsense-mediated mRNA decay enhances in vivo nonsense suppression. Keeling KM, Wang D, Dai Y, Murugesan S, Chenna B, Clark J, Belakhov V, Kandasamy J, Velu SE, Baasov T, Bedwell DM. PLoS One 8 e60478 (2013)
- Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity. Lee SR, Pratt GA, Martinez FJ, Yeo GW, Lykke-Andersen J. Mol Cell 59 413-425 (2015)
- Crystal structure of Middle East respiratory syndrome coronavirus helicase. Hao W, Wojdyla JA, Zhao R, Han R, Das R, Zlatev I, Manoharan M, Wang M, Cui S. PLoS Pathog 13 e1006474 (2017)
- Unexpected roles for UPF1 in HIV-1 RNA metabolism and translation. Ajamian L, Abrahamyan L, Milev M, Ivanov PV, Kulozik AE, Gehring NH, Mouland AJ. RNA 14 914-927 (2008)
- Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5-SMG7 and SMG6. Chakrabarti S, Bonneau F, Schüssler S, Eppinger E, Conti E. Nucleic Acids Res 42 9447-9460 (2014)
- DNA binding to RecD: role of the 1B domain in SF1B helicase activity. Saikrishnan K, Griffiths SP, Cook N, Court R, Wigley DB. EMBO J 27 2222-2229 (2008)
- IGHMBP2 is a ribosome-associated helicase inactive in the neuromuscular disorder distal SMA type 1 (DSMA1). Guenther UP, Handoko L, Laggerbauer B, Jablonka S, Chari A, Alzheimer M, Ohmer J, Plöttner O, Gehring N, Sickmann A, von Au K, Schuelke M, Fischer U. Hum Mol Genet 18 1288-1300 (2009)
- Staufen2 functions in Staufen1-mediated mRNA decay by binding to itself and its paralog and promoting UPF1 helicase but not ATPase activity. Park E, Gleghorn ML, Maquat LE. Proc Natl Acad Sci U S A 110 405-412 (2013)
- An unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for efficient nonsense-mediated mRNA decay. Jonas S, Weichenrieder O, Izaurralde E. Genes Dev 27 211-225 (2013)
- Functional cross-talk between distant domains of chikungunya virus non-structural protein 2 is decisive for its RNA-modulating activity. Das PK, Merits A, Lulla A. J Biol Chem 289 5635-5653 (2014)
- The cryo-EM structure of the UPF-EJC complex shows UPF1 poised toward the RNA 3' end. Melero R, Buchwald G, Castaño R, Raabe M, Gil D, Lázaro M, Urlaub H, Conti E, Llorca O. Nat Struct Mol Biol 19 498-505, S1-2 (2012)
- A novel phosphorylation-independent interaction between SMG6 and UPF1 is essential for human NMD. Nicholson P, Josi C, Kurosawa H, Yamashita A, Mühlemann O. Nucleic Acids Res 42 9217-9235 (2014)
- Processing bodies are not required for mammalian nonsense-mediated mRNA decay. Stalder L, Mühlemann O. RNA 15 1265-1273 (2009)
- Tight intramolecular regulation of the human Upf1 helicase by its N- and C-terminal domains. Fiorini F, Boudvillain M, Le Hir H. Nucleic Acids Res 41 2404-2415 (2013)
- The RNA helicase DHX34 activates NMD by promoting a transition from the surveillance to the decay-inducing complex. Hug N, Cáceres JF. Cell Rep 8 1845-1856 (2014)
- RNA helicase module in an acetyltransferase that modifies a specific tRNA anticodon. Chimnaronk S, Suzuki T, Manita T, Ikeuchi Y, Yao M, Suzuki T, Tanaka I. EMBO J 28 1362-1373 (2009)
- Structural basis for the regulatory function of a complex zinc-binding domain in a replicative arterivirus helicase resembling a nonsense-mediated mRNA decay helicase. Deng Z, Lehmann KC, Li X, Feng C, Wang G, Zhang Q, Qi X, Yu L, Zhang X, Feng W, Wu W, Gong P, Tao Y, Posthuma CC, Snijder EJ, Gorbalenya AE, Chen Z. Nucleic Acids Res 42 3464-3477 (2014)
- Crystal structure of the superfamily 1 helicase from Tomato mosaic virus. Nishikiori M, Sugiyama S, Xiang H, Niiyama M, Ishibashi K, Inoue T, Ishikawa M, Matsumura H, Katoh E. J Virol 86 7565-7576 (2012)
- The RNA-Binding ATPase, Armitage, Couples piRNA Amplification in Nuage to Phased piRNA Production on Mitochondria. Ge DT, Wang W, Tipping C, Gainetdinov I, Weng Z, Zamore PD. Mol Cell 74 982-995.e6 (2019)
- Roles of individual domains in the function of DHX29, an essential factor required for translation of structured mammalian mRNAs. Dhote V, Sweeney TR, Kim N, Hellen CU, Pestova TV. Proc Natl Acad Sci U S A 109 E3150-9 (2012)
- The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription. Akay A, Di Domenico T, Suen KM, Nabih A, Parada GE, Larance M, Medhi R, Berkyurek AC, Zhang X, Wedeles CJ, Rudolph KLM, Engelhardt J, Hemberg M, Ma P, Lamond AI, Claycomb JM, Miska EA. Dev Cell 42 241-255.e6 (2017)
- Saccharomyces cerevisiae Sen1 Helicase Domain Exhibits 5'- to 3'-Helicase Activity with a Preference for Translocation on DNA Rather than RNA. Martin-Tumasz S, Brow DA. J Biol Chem 290 22880-22889 (2015)
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- The Ighmbp2 helicase structure reveals the molecular basis for disease-causing mutations in DMSA1. Lim SC, Bowler MW, Lai TF, Song H. Nucleic Acids Res 40 11009-11022 (2012)
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- Molecular cloning and characterization of Mj-mov-10, a putative RNA helicase involved in RNAi of kuruma shrimp. Phetrungnapha A, Kondo H, Hirono I, Panyim S, Ongvarrasopone C. Fish Shellfish Immunol 44 241-247 (2015)
- Variations of IGHMBP2 gene was not the major cause of Han Chinese patients with non-5q-spinal muscular atrophies. Lin X, Zhang QJ, He J, Lin MT, Murong SX, Wang N, Chen WJ. J Child Neurol 29 NP35-9 (2014)
- Sen1 architecture: RNA-DNA hybrid resolution, autoregulation, and insights into SETX inactivation in AOA2. Appel CD, Bermek O, Dandey VP, Wood M, Viverette E, Williams JG, Bouvette J, Riccio AA, Krahn JM, Borgnia MJ, Williams RS. Mol Cell 83 3692-3706.e5 (2023)