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Crystal structure of the effector binding domain of a BenM variant (BenM R156H/T157S)

Source organism: Acinetobacter baylyi ADP1
Biochemical function: DNA-binding transcription factor activity
Biological process: catabolic process
Cellular component: protein-DNA complex

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GO terms

Sequence families

Pfam Protein families (Pfam)
PF03466
Domain description: LysR substrate binding domain
Occurring in:
  1. HTH-type transcriptional regulator BenM
The deposited structure of PDB entry 2h9b contains 2 copies of Pfam domain PF03466 (LysR substrate binding domain) in HTH-type transcriptional regulator BenM. Showing 1 copy in chain B.

PF00126
Domain description: Bacterial regulatory helix-turn-helix protein, lysR family
Occurring in:
  1. HTH-type transcriptional regulator BenM
The deposited structure of PDB entry 2h9b contains 2 copies of Pfam domain PF00126 (Bacterial regulatory helix-turn-helix protein, lysR family) in HTH-type transcriptional regulator BenM. Showing 1 copy in chain B (this domain is out of the observed residue ranges!).

InterPro InterPro annotations
IPR000847
Domain description: Transcription regulator HTH, LysR
Occurring in:
  1. HTH-type transcriptional regulator BenM
IPR005119
Domain description: LysR, substrate-binding
Occurring in:
  1. HTH-type transcriptional regulator BenM
IPR036390
Domain description: Winged helix DNA-binding domain superfamily
Occurring in:
  1. HTH-type transcriptional regulator BenM
IPR036388
Domain description: Winged helix-like DNA-binding domain superfamily
Occurring in:
  1. HTH-type transcriptional regulator BenM

Structure domain

CATH CATH domain
3.40.190.10
Class: Alpha Beta
Architecture: 3-Layer(aba) Sandwich
Topology: D-Maltodextrin-Binding Protein; domain 2
Homology: Periplasmic binding protein-like II
Occurring in:
  1. HTH-type transcriptional regulator BenM
The deposited structure of PDB entry 2h9b contains 4 copies of CATH domain 3.40.190.10 (D-Maltodextrin-Binding Protein; domain 2) in HTH-type transcriptional regulator BenM. Showing 2 copies in chain B.

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