› 2jve

Solution NMR

Solution structure of the extracellular domain of Prod1, a protein implicated in proximodistal identity during amphibian limb regeneration

Released:
DOI: 10.2210/pdb2jve/pdb
PDB entry 2jve coloured by chain, ensemble of 20 models, front view.
PDB entry 2jve coloured by chain, ensemble of 20 models, side view.
PDB entry 2jve coloured by chain, ensemble of 20 models, top view.
Source organism: Notophthalmus viridescens
Primary publication:
Solution structure and phylogenetics of Prod1, a member of the three-finger protein superfamily implicated in salamander limb regeneration.
Garza-Garcia A, Harris R, Esposito D, Gates PB, Driscoll PC
OpenAccess logo PLoS One 4 e7123 (2009)
PMID: 19771161

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned
Sequence domain:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-108603 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Prod 1 Chain: A
Molecule details ›
Chain: A
Length: 91 amino acids
Theoretical weight: 10.22 KDa
Source organism: Notophthalmus viridescens
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A8D0E6 (Residues: 19-88; Coverage: 79%)
Structure domains: CD59

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 91%
Refinement method: DGSA-distance geometry simulated annealing
Expression system: Escherichia coli BL21(DE3)

Quick links

Citations

10 review citations

Limb regeneration: a new development?
Nacu et al. (2011)
9 more

1 mention without citation

Solution structure and phylogenetics of Prod1, a member of the three-finger protein superfamily implicated in salamander limb regeneration.
Garza-Garcia et al. (2009)