2lyd

Solution NMR

The solution structure of the Dm DCP1 EVH1 domain in complex with the XRN1 DBM peptide

Released:

Function and Biology Details

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
PDBe Complex ID:
PDB-CPX-513734 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
mRNA-decapping enzyme C-terminal domain-containing protein Chain: A
Molecule details ›
Chain: A
Length: 134 amino acids
Theoretical weight: 15.47 KDa
Source organism: Drosophila melanogaster
Expression system: Escherichia coli
UniProt:
  • Canonical: Q9W1H5 (Residues: 1-127; Coverage: 34%)
Gene names: CG11183, DCP1, Dcp-1, Dcp1, Dcp1p, Dmel\CG11183, Dmel_CG11183, anon-WO0118547.163, dDCP1, dDcp1, dcp-1
Sequence domains: Dcp1-like decapping family
Structure domains: Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)
5'-3' exoribonuclease 1 Chain: B
Molecule details ›
Chain: B
Length: 38 amino acids
Theoretical weight: 4.36 KDa
Source organism: Drosophila melanogaster
Expression system: Escherichia coli
UniProt:
  • Canonical: E1JJR3 (Residues: 1322-1355; Coverage: 2%)
Gene names: CG3291, DmXrn1, Dmel\CG3291, Dmel_CG3291, PCM, Pcm, XRN1, XRN1/pcm, Xrn1, Xrn1p, dXRN1, pcm
Sequence domains: 5-3 exonuclease XRN1 DCP1-binding motif

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Chemical shift assignment: 33%
Refinement method: simulated annealing
Expression system: Escherichia coli